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The map label for this gene is rpa [H]

Identifier: 18978392

GI number: 18978392

Start: 1867264

End: 1868340

Strand: Reverse

Name: rpa [H]

Synonym: PF2020

Alternate gene names: 18978392

Gene position: 1868340-1867264 (Counterclockwise)

Preceding gene: 18978393

Following gene: 18978391

Centisome position: 97.91

GC content: 42.43

Gene sequence:

>1077_bases
ATGAGTGCATTTACAAAAGAAGAAATAATCAAGAGGATCCTGGAAGAAGTGGAAGGAATAACTCTAGAAGAAATTGAGAA
CCAAATAAGGCAAATAATGAGGGAAAACAATATTTCAGAGCATGCAGCTGCTCTCTTACTAGCAGAAAGGCTGGGAGTTG
AAGTTACCAAAAGAGAAGAACAACCTTTAATGAAGATTAGCGACCTATATCCAGGAATGGATCCCCACGAGGTCAACATT
GTTGGAAGAATACTTAAGAAGTATCCACCGCGAGAATACACAAAGAAGGATGGAAGCATTGGAAGGGTTGCCAGTCTAGT
TATATACGATGATACTGGGAGAGCGAGGGTTGTTCTTTGGGATTCAAAAGTTTTGGAGTATTACAGCAAGCTAGAAGTAG
GGGATGTTATTAAGGTTTTAGACGCCCAGGTTAGGGAGAGCTTATCTGGTTTGCCTGAATTGCACATTAACTTCAGGGCT
AGAATAATTAAAAACCCAGATGATCCTAGGGTTCAGGATATCCCACCTCTTGAAGAAGTTAGAGTGGCAACTTATACGAG
AAAGAAGATCAGTGAGGTCGAGCCTGGGGATAGATTTGTAGAGCTTAGGGGAACAATTGCCAAAGTTTACAGAGTTTTGG
TATATGATGCATGTCCAGAGTGTAAGAAGAAGGTTGACTATGACCCAGGAATGGACGTTTGGATATGTCCAGAACATGGA
GAGGTTGAGCCAATAAAAATCACTATTCTTGACTTTGGGCTTGATGATGGCTCGGGATACATTAGGATTACCCTCTTTGG
AGACGATGCTGAAGAGTTGCTGGGAGTAGGGCCAGAAGAGATTGCCCAAAAGCTTAAGGAAATGGAGAGCATGGGCATGA
CTCTCAAGGAGGCAGCGAGAAAATTGGCGGAGGAAGAGTTCTACAATATAATAGGGAAAGAAATAATCGTGAGGGGAAAT
GTAATTGAGGACAGGTTCTTGGGCCTAATCTTAAGGGCCTCCTCCTGGGAAGAAGTTGACTACAAGAGAGAAATTGAGAG
AATTAAGAGGGAATTGGAAGAATTGGGGGTGATGTGA

Upstream 100 bases:

>100_bases
CTGATTTGATGAAAAAGATAGAGGAAAGTGAAAAGAAAAAGGAATGACCTTCCAAAGGCTTAAATATTCTCCAAAGAAAT
TACTATTTAGGTGAATGATC

Downstream 100 bases:

>100_bases
AATGGAAGAAGTTACTCAGGTGAGAAAAAGAAGACCTGCTATAGAGAAAAAAATTGCTGAAATTACAGAGAATGATACGA
GGGTATCCATAATTGGCAAG

Product: replication factor A

Products: NA

Alternate protein names: RF-A; RP-A; Replication factor A protein 1; Single-stranded DNA-binding protein; mjaSSB [H]

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MSAFTKEEIIKRILEEVEGITLEEIENQIRQIMRENNISEHAAALLLAERLGVEVTKREEQPLMKISDLYPGMDPHEVNI
VGRILKKYPPREYTKKDGSIGRVASLVIYDDTGRARVVLWDSKVLEYYSKLEVGDVIKVLDAQVRESLSGLPELHINFRA
RIIKNPDDPRVQDIPPLEEVRVATYTRKKISEVEPGDRFVELRGTIAKVYRVLVYDACPECKKKVDYDPGMDVWICPEHG
EVEPIKITILDFGLDDGSGYIRITLFGDDAEELLGVGPEEIAQKLKEMESMGMTLKEAARKLAEEEFYNIIGKEIIVRGN
VIEDRFLGLILRASSWEEVDYKREIERIKRELEELGVM

Sequences:

>Translated_358_residues
MSAFTKEEIIKRILEEVEGITLEEIENQIRQIMRENNISEHAAALLLAERLGVEVTKREEQPLMKISDLYPGMDPHEVNI
VGRILKKYPPREYTKKDGSIGRVASLVIYDDTGRARVVLWDSKVLEYYSKLEVGDVIKVLDAQVRESLSGLPELHINFRA
RIIKNPDDPRVQDIPPLEEVRVATYTRKKISEVEPGDRFVELRGTIAKVYRVLVYDACPECKKKVDYDPGMDVWICPEHG
EVEPIKITILDFGLDDGSGYIRITLFGDDAEELLGVGPEEIAQKLKEMESMGMTLKEAARKLAEEEFYNIIGKEIIVRGN
VIEDRFLGLILRASSWEEVDYKREIERIKRELEELGVM
>Mature_357_residues
SAFTKEEIIKRILEEVEGITLEEIENQIRQIMRENNISEHAAALLLAERLGVEVTKREEQPLMKISDLYPGMDPHEVNIV
GRILKKYPPREYTKKDGSIGRVASLVIYDDTGRARVVLWDSKVLEYYSKLEVGDVIKVLDAQVRESLSGLPELHINFRAR
IIKNPDDPRVQDIPPLEEVRVATYTRKKISEVEPGDRFVELRGTIAKVYRVLVYDACPECKKKVDYDPGMDVWICPEHGE
VEPIKITILDFGLDDGSGYIRITLFGDDAEELLGVGPEEIAQKLKEMESMGMTLKEAARKLAEEEFYNIIGKEIIVRGNV
IEDRFLGLILRASSWEEVDYKREIERIKRELEELGVM

Specific function: Probably plays an essential for replication of the chromosome, DNA recombination and repair [H]

COG id: COG1599

COG function: function code L; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 OB DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365
- InterPro:   IPR013955 [H]

Pfam domain/function: PF08646 Rep_fac-A_C; PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 41046; Mature: 40915

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAFTKEEIIKRILEEVEGITLEEIENQIRQIMRENNISEHAAALLLAERLGVEVTKREE
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEECCCC
QPLMKISDLYPGMDPHEVNIVGRILKKYPPREYTKKDGSIGRVASLVIYDDTGRARVVLW
CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEEEECCCCCEEEEEE
DSKVLEYYSKLEVGDVIKVLDAQVRESLSGLPELHINFRARIIKNPDDPRVQDIPPLEEV
CHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHH
RVATYTRKKISEVEPGDRFVELRGTIAKVYRVLVYDACPECKKKVDYDPGMDVWICPEHG
HHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEECCCCC
EVEPIKITILDFGLDDGSGYIRITLFGDDAEELLGVGPEEIAQKLKEMESMGMTLKEAAR
CCCEEEEEEEEECCCCCCCEEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHH
KLAEEEFYNIIGKEIIVRGNVIEDRFLGLILRASSWEEVDYKREIERIKRELEELGVM
HHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SAFTKEEIIKRILEEVEGITLEEIENQIRQIMRENNISEHAAALLLAERLGVEVTKREE
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEECCCC
QPLMKISDLYPGMDPHEVNIVGRILKKYPPREYTKKDGSIGRVASLVIYDDTGRARVVLW
CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEEEECCCCCEEEEEE
DSKVLEYYSKLEVGDVIKVLDAQVRESLSGLPELHINFRARIIKNPDDPRVQDIPPLEEV
CHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHH
RVATYTRKKISEVEPGDRFVELRGTIAKVYRVLVYDACPECKKKVDYDPGMDVWICPEHG
HHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEECCCCC
EVEPIKITILDFGLDDGSGYIRITLFGDDAEELLGVGPEEIAQKLKEMESMGMTLKEAAR
CCCEEEEEEEEECCCCCCCEEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHH
KLAEEEFYNIIGKEIIVRGNVIEDRFLGLILRASSWEEVDYKREIERIKRELEELGVM
HHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087; 9843941 [H]