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The map label for this gene is 18978382

Identifier: 18978382

GI number: 18978382

Start: 1857987

End: 1858658

Strand: Direct

Name: 18978382

Synonym: PF2010

Alternate gene names: NA

Gene position: 1857987-1858658 (Clockwise)

Preceding gene: 18978381

Following gene: 18978383

Centisome position: 97.37

GC content: 42.56

Gene sequence:

>672_bases
ATGATGCTGATAACTACTTCACATAGGCCTACCAGAAGAACTAGAAGTTTTGGTCATGATTTAGAGAGAGTATTCCCCAA
TTCTCTTTACTTGACTAGGGGGAAGAAGACCATCCAAGAGCTTCTCATGGAAGCTTATGACAGGGGATATGAGAGGCTTC
TCATATTAAACGTTTGGAAGGGGAACCCCCTCAAAATGACATTCATAAAAGTCCACCCCGAGGATTGGGGTTATTTGGGA
TATTTGTATCTTCATGGTATAAAGTTGCAGAGGGAGATGGGATTTAAGGGGCTCAATCCAATAAGAGAGGATATGCCTTT
AGTTGTTACGACTGCCAAAAGGGTTGGGTGGGATCACATTGCATTTGCCCAAGTTTTTGCTGAACTAACCACTGGAAAGT
TTGTTCCCAGGGGAGATAAGAGCTTGACATACATAGCGGATAAATACGATACAGATGTAATTGCGGTTATTGAAAGGCAT
CCTAGAGGAATGGTTATAAACTTCTATAGGCTTGATGTTACAAAAGACAGGCCGGTTGGACCTCTAATCAACGTAAAGAT
ATGGATCATGGAAGATGGTAGAAGATGGGACTACAAAGAGGCCCTAGGAATTAAGGTTCCACGGAGGGAAAAGGGTGAAG
GCCAAGAGAGTTCAAGCGAAAATCGAGATTGA

Upstream 100 bases:

>100_bases
AAGATTCTATACAAGCCAAGACCCAAGGTTCCAAGAAGGGTAAAGGCCATTTAGCTAACATTTTTAACCTTTTCTTTTAA
ACTTCCTAAGGGTAGCACCT

Downstream 100 bases:

>100_bases
ATTTCCCTCCGAAGATGTTGCTAAAGTTGTTTATGAAGCTGTTCTTTACGAGCACTTAAGCGTTCCATATAGGAGGAGTG
AAATTGATTTCAAGCTGGAA

Product: ribosomal biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MMLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQELLMEAYDRGYERLLILNVWKGNPLKMTFIKVHPEDWGYLG
YLYLHGIKLQREMGFKGLNPIREDMPLVVTTAKRVGWDHIAFAQVFAELTTGKFVPRGDKSLTYIADKYDTDVIAVIERH
PRGMVINFYRLDVTKDRPVGPLINVKIWIMEDGRRWDYKEALGIKVPRREKGEGQESSSENRD

Sequences:

>Translated_223_residues
MMLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQELLMEAYDRGYERLLILNVWKGNPLKMTFIKVHPEDWGYLG
YLYLHGIKLQREMGFKGLNPIREDMPLVVTTAKRVGWDHIAFAQVFAELTTGKFVPRGDKSLTYIADKYDTDVIAVIERH
PRGMVINFYRLDVTKDRPVGPLINVKIWIMEDGRRWDYKEALGIKVPRREKGEGQESSSENRD
>Mature_223_residues
MMLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQELLMEAYDRGYERLLILNVWKGNPLKMTFIKVHPEDWGYLG
YLYLHGIKLQREMGFKGLNPIREDMPLVVTTAKRVGWDHIAFAQVFAELTTGKFVPRGDKSLTYIADKYDTDVIAVIERH
PRGMVINFYRLDVTKDRPVGPLINVKIWIMEDGRRWDYKEALGIKVPRREKGEGQESSSENRD

Specific function: Probably involved in the biogenesis of the ribosome

COG id: COG2136

COG function: function code JA; Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Brix domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): BRIX_PYRFU (Q8TZI2)

Other databases:

- EMBL:   AE009950
- RefSeq:   NP_579739.1
- ProteinModelPortal:   Q8TZI2
- EnsemblBacteria:   EBPYRT00000005450
- GeneID:   1469895
- GenomeReviews:   AE009950_GR
- KEGG:   pfu:PF2010
- NMPDR:   fig|186497.1.peg.2065
- GeneTree:   EBGT00050000022823
- HOGENOM:   HBG726986
- OMA:   IWIMEDG
- ProtClustDB:   PRK03972
- GO:   GO:0006412
- HAMAP:   MF_00699
- InterPro:   IPR004154
- InterPro:   IPR007109
- SMART:   SM00879

Pfam domain/function: PF04427 Brix; SSF52954 Anticodon_bd

EC number: NA

Molecular weight: Translated: 26071; Mature: 26071

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50833 BRIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQELLMEAYDRGYERLLILNVWK
CEEEECCCCCCHHHHHHCCHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEEEEC
GNPLKMTFIKVHPEDWGYLGYLYLHGIKLQREMGFKGLNPIREDMPLVVTTAKRVGWDHI
CCCEEEEEEEECCCCCCEEEEEEEEEEEEEHHCCCCCCCHHHHCCCEEEEEHHHCCCCHH
AFAQVFAELTTGKFVPRGDKSLTYIADKYDTDVIAVIERHPRGMVINFYRLDVTKDRPVG
HHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCC
PLINVKIWIMEDGRRWDYKEALGIKVPRREKGEGQESSSENRD
CEEEEEEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQELLMEAYDRGYERLLILNVWK
CEEEECCCCCCHHHHHHCCHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEEEEC
GNPLKMTFIKVHPEDWGYLGYLYLHGIKLQREMGFKGLNPIREDMPLVVTTAKRVGWDHI
CCCEEEEEEEECCCCCCEEEEEEEEEEEEEHHCCCCCCCHHHHCCCEEEEEHHHCCCCHH
AFAQVFAELTTGKFVPRGDKSLTYIADKYDTDVIAVIERHPRGMVINFYRLDVTKDRPVG
HHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCC
PLINVKIWIMEDGRRWDYKEALGIKVPRREKGEGQESSSENRD
CEEEEEEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA