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The map label for this gene is 18978344

Identifier: 18978344

GI number: 18978344

Start: 1822044

End: 1822760

Strand: Direct

Name: 18978344

Synonym: PF1972

Alternate gene names: NA

Gene position: 1822044-1822760 (Clockwise)

Preceding gene: 18978343

Following gene: 18978346

Centisome position: 95.48

GC content: 41.98

Gene sequence:

>717_bases
ATGCTTATCGGAGGATGGAAGGCAGTAAGCATGGTAGACATTCCTGGGAAGGTTACCTTTACCCTCTGGCTTTGCGGATG
CAATCTTAGATGTCCATTTTGCCACAACTGGAAGTTAGCCCAGGGAATGGAATGCTTTAAACTAGAGAAAGAGGAGTTAA
TTGCAGAAGTCGAGGAAAATTCATACCTAGTGGATTACTTTCATGTAACGGGAGGAGAACCACTAATTCAGTGGAGGGAG
TTTCAGGAACTTCTCAGGGAGGTTAGAGAGTATCTTCCAGTAAGTCTTAACTCAAACCTAACATTAGTGAAACCGTTGGA
GAAGATAATTGACCTTGTGGATCATGTGGCCACGGATCTAAAAGCTCCACCAACTGAACTTTATGGCTTACCAGAAAATG
TTTCCCTCAAGCTCTGGCAACTATTTTTGAAGGGCTTAGAAATAGTCTCCGAAAATTCCATACCTCTAGAGCTTAGAATA
CCCGTAAGCAAGGGATTTGATATTCAAGAGATAATGAGATGGATCGAAGAAGGCCTAGAAAAGATAGACACAGATTTCTA
TGTTGTGCTACATCCCTTAGTGGGACCTCCCATAACAAATCCCAGGAATAAAGAGTGGTGCAACAACCACTGTTGGGCCG
ACAGAGAAATCGAATTAATAAAAGAAAAGCTAGAAGAGAGGGGGGTAAAGAAAGTTATCGTCAGGAAGTATTCTTAA

Upstream 100 bases:

>100_bases
GAGTAGAATAATAGGCTATTATAGGCCATTGAAGAACTGGAATCCATATAGGAAGAAAGAGTTCTGGAGAAGGAAACACT
ACTTAGCCTGAGGTGTCTCT

Downstream 100 bases:

>100_bases
GCTCTTCCCTTATTCTTTCTATTTCAGCCTTAGCTTCATCGAGATTGTTTTTGATAAACTCATATTTAATCTTCTCAATG
AACCCCTGGGAAGTCTCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MLIGGWKAVSMVDIPGKVTFTLWLCGCNLRCPFCHNWKLAQGMECFKLEKEELIAEVEENSYLVDYFHVTGGEPLIQWRE
FQELLREVREYLPVSLNSNLTLVKPLEKIIDLVDHVATDLKAPPTELYGLPENVSLKLWQLFLKGLEIVSENSIPLELRI
PVSKGFDIQEIMRWIEEGLEKIDTDFYVVLHPLVGPPITNPRNKEWCNNHCWADREIELIKEKLEERGVKKVIVRKYS

Sequences:

>Translated_238_residues
MLIGGWKAVSMVDIPGKVTFTLWLCGCNLRCPFCHNWKLAQGMECFKLEKEELIAEVEENSYLVDYFHVTGGEPLIQWRE
FQELLREVREYLPVSLNSNLTLVKPLEKIIDLVDHVATDLKAPPTELYGLPENVSLKLWQLFLKGLEIVSENSIPLELRI
PVSKGFDIQEIMRWIEEGLEKIDTDFYVVLHPLVGPPITNPRNKEWCNNHCWADREIELIKEKLEERGVKKVIVRKYS
>Mature_238_residues
MLIGGWKAVSMVDIPGKVTFTLWLCGCNLRCPFCHNWKLAQGMECFKLEKEELIAEVEENSYLVDYFHVTGGEPLIQWRE
FQELLREVREYLPVSLNSNLTLVKPLEKIIDLVDHVATDLKAPPTELYGLPENVSLKLWQLFLKGLEIVSENSIPLELRI
PVSKGFDIQEIMRWIEEGLEKIDTDFYVVLHPLVGPPITNPRNKEWCNNHCWADREIELIKEKLEERGVKKVIVRKYS

Specific function: Unknown

COG id: COG1180

COG function: function code O; Pyruvate-formate lyase-activating enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the organic radical-activating enzymes family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR012840
- InterPro:   IPR001989
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 27661; Mature: 27661

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIGGWKAVSMVDIPGKVTFTLWLCGCNLRCPFCHNWKLAQGMECFKLEKEELIAEVEEN
CEECCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHCC
SYLVDYFHVTGGEPLIQWREFQELLREVREYLPVSLNSNLTLVKPLEKIIDLVDHVATDL
CEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHC
KAPPTELYGLPENVSLKLWQLFLKGLEIVSENSIPLELRIPVSKGFDIQEIMRWIEEGLE
CCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
KIDTDFYVVLHPLVGPPITNPRNKEWCNNHCWADREIELIKEKLEERGVKKVIVRKYS
HHCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCC
>Mature Secondary Structure
MLIGGWKAVSMVDIPGKVTFTLWLCGCNLRCPFCHNWKLAQGMECFKLEKEELIAEVEEN
CEECCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHCC
SYLVDYFHVTGGEPLIQWREFQELLREVREYLPVSLNSNLTLVKPLEKIIDLVDHVATDL
CEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHC
KAPPTELYGLPENVSLKLWQLFLKGLEIVSENSIPLELRIPVSKGFDIQEIMRWIEEGLE
CCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
KIDTDFYVVLHPLVGPPITNPRNKEWCNNHCWADREIELIKEKLEERGVKKVIVRKYS
HHCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]