Click here to switch to the map view.

The map label for this gene is 18978301

Identifier: 18978301

GI number: 18978301

Start: 1779108

End: 1779800

Strand: Reverse

Name: 18978301

Synonym: PF1929

Alternate gene names: NA

Gene position: 1779800-1779108 (Counterclockwise)

Preceding gene: 18978305

Following gene: 18978299

Centisome position: 93.27

GC content: 39.97

Gene sequence:

>693_bases
ATGTGGGCTTATCTAGCAATCTTAGCGATGGCCTATGTCACTTACAAAACAAAAGCGCTTGACATAAAGGGAATAATAGC
TGCCCTGCTCTTAGGGGTCATTATAGTAACCTTAGGAGGAATTATACCCTTTATTGCATTGTTGGCATTTCTAGTTATGG
GAACTCTTGCAACAAAATTTAGGTACAGAGAAAAGAGAAAGATGGGTCTAATAGATGAAAGTATCAGGAGCGTAGGAAAC
GTTCTTGGAAACGGCTTAGCCCCATTGCTTTTTGTCATTGTAGAGTTTATAATAAAGCAGGATTTTGGGTGGGCAGGAGT
TCTCTCGTCCATAGCAGTTGCGAATGCTGATACTCTTGCAAGTGAAATTGGAAAAGTTTTTGGAAAGAATCCCAGGATTA
TAACGAATTTGAAACCTGCGAAACCTGGAGAAGAAGGAGCAGTAAGCTTTGCAGGCGAATTTGCTGCTTTATTAGGAGCT
TTTGTAATATCTCTCTTTGGACTATCTCTAACTGAGTATGGAATTCAGATGATTGTTTCTGTCACCTTGGCTGGCTTAAT
AGGGGCAAATATTGATAGTTTAATTGGAGCTACTTTTGAAAAGAATGGGTATTTTGGGAACAACATGACAAACTTTATAG
CAACTCTCTTAGGAGGACTATTGGGAATGGCGCTGTTCCTCCTACTGGTGTGA

Upstream 100 bases:

>100_bases
AAACCACCCCTTATGAGCTTACTATATTGGTGGGGAATACTTTTTACGGAGAATAAAGGAGGAAAAAGATATAAATAGCA
CGGATAGTGAGAAACTACCA

Downstream 100 bases:

>100_bases
TGAAAAGGCGGATTGCTGAGAGGATGATGAAGACCTTAGGGGCTGATCACACCTCAATGATTGTAAAGTCCCTTGCAACT
TCTCCCTGTACTCCTGATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MWAYLAILAMAYVTYKTKALDIKGIIAALLLGVIIVTLGGIIPFIALLAFLVMGTLATKFRYREKRKMGLIDESIRSVGN
VLGNGLAPLLFVIVEFIIKQDFGWAGVLSSIAVANADTLASEIGKVFGKNPRIITNLKPAKPGEEGAVSFAGEFAALLGA
FVISLFGLSLTEYGIQMIVSVTLAGLIGANIDSLIGATFEKNGYFGNNMTNFIATLLGGLLGMALFLLLV

Sequences:

>Translated_230_residues
MWAYLAILAMAYVTYKTKALDIKGIIAALLLGVIIVTLGGIIPFIALLAFLVMGTLATKFRYREKRKMGLIDESIRSVGN
VLGNGLAPLLFVIVEFIIKQDFGWAGVLSSIAVANADTLASEIGKVFGKNPRIITNLKPAKPGEEGAVSFAGEFAALLGA
FVISLFGLSLTEYGIQMIVSVTLAGLIGANIDSLIGATFEKNGYFGNNMTNFIATLLGGLLGMALFLLLV
>Mature_230_residues
MWAYLAILAMAYVTYKTKALDIKGIIAALLLGVIIVTLGGIIPFIALLAFLVMGTLATKFRYREKRKMGLIDESIRSVGN
VLGNGLAPLLFVIVEFIIKQDFGWAGVLSSIAVANADTLASEIGKVFGKNPRIITNLKPAKPGEEGAVSFAGEFAALLGA
FVISLFGLSLTEYGIQMIVSVTLAGLIGANIDSLIGATFEKNGYFGNNMTNFIATLLGGLLGMALFLLLV

Specific function: Unknown

COG id: COG1836

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TMEM19 family [H]

Homologues:

Organism=Homo sapiens, GI21361720, Length=218, Percent_Identity=30.2752293577982, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002794 [H]

Pfam domain/function: PF01940 DUF92 [H]

EC number: NA

Molecular weight: Translated: 24355; Mature: 24355

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWAYLAILAMAYVTYKTKALDIKGIIAALLLGVIIVTLGGIIPFIALLAFLVMGTLATKF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYREKRKMGLIDESIRSVGNVLGNGLAPLLFVIVEFIIKQDFGWAGVLSSIAVANADTLA
HHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SEIGKVFGKNPRIITNLKPAKPGEEGAVSFAGEFAALLGAFVISLFGLSLTEYGIQMIVS
HHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTLAGLIGANIDSLIGATFEKNGYFGNNMTNFIATLLGGLLGMALFLLLV
HHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MWAYLAILAMAYVTYKTKALDIKGIIAALLLGVIIVTLGGIIPFIALLAFLVMGTLATKF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYREKRKMGLIDESIRSVGNVLGNGLAPLLFVIVEFIIKQDFGWAGVLSSIAVANADTLA
HHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SEIGKVFGKNPRIITNLKPAKPGEEGAVSFAGEFAALLGAFVISLFGLSLTEYGIQMIVS
HHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTLAGLIGANIDSLIGATFEKNGYFGNNMTNFIATLLGGLLGMALFLLLV
HHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]