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The map label for this gene is rps4e [H]

Identifier: 18978184

GI number: 18978184

Start: 1677965

End: 1678696

Strand: Reverse

Name: rps4e [H]

Synonym: PF1812

Alternate gene names: 18978184

Gene position: 1678696-1677965 (Counterclockwise)

Preceding gene: 18978185

Following gene: 18978183

Centisome position: 87.97

GC content: 43.72

Gene sequence:

>732_bases
ATGGCGAGAAAGGGTCCTAAGAGGCACCTTAAGAGACTTGCTGCTCCAACTTCATGGTATATTGAGAGGAAGGCCTACAA
ATGGGCTGTTAGGCCCAGACCTGGACCTCACAACATGAGAACATCAATACCTCTCCTATACATAGTAAGAGACTACTTGG
GGTACGCAAAGACTGCTAGAGAAGCAAGAAAAATACTAAACGAGGGCAAGTTCCTAGTTGATGGAAGGGTTAGAAAGGAC
TACAAGTTCCCTGTCGGTATAATGGATGTTGTCTCAATTCCAGAAACAGGAGAGCACTACAGAGTCTTGCCAAATAGAAT
AGGCAAGCTAATCCTTCACCCAATATCTGAAGATGAGGCATTCATAAAGCCTCTGAGAATTAGAAACAAGAGAATGATAA
AGGGAGCTAGGGTTCAGCTTAACTTCCACGATGGGACTAACCACATAGTCTCAATAGCCGAAAAGGACAACTACTTCACC
TCATACACAGTGTTGATGAAGGTTCCCGAGAGGGAAATCCTTGAAGTGCTACCATTCGAGAAGGGTGCTTACGTCTTCGT
AACCCAAGGTAAGAACGTTGCTAGGAAAGGTAGAATAGTGGAAATAAAGAGATTCCCAATGGGTTGGCCAGATGTAGTCA
CAATTGAAGATGAAGAAGGAGAGCTCTTCGACACGTTAAAAGAGTATGCATTTGTAGTTGGCACAGATAAGCCAAAGATT
TCTCTTCCGTGA

Upstream 100 bases:

>100_bases
CAGAGGTCTTCTATCCAATTCACCCTTCAAACGTGATGATTATTGAGCTAAATTTAGAGGATGAGAAGAGAAAGAAAATA
ATTGAGAGGAGGGCTGGATA

Downstream 100 bases:

>100_bases
GGTGGGCTAGATGGCAGTAGAGATACCAAACAAGGAGCAAATTTTAGCTGATTGGGAAGCTCATCCAATGAGAAGGCCTA
GAATAGAGAAGGTTACCATA

Product: 30S ribosomal protein S4e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKD
YKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFT
SYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGTDKPKI
SLP

Sequences:

>Translated_243_residues
MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKD
YKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFT
SYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGTDKPKI
SLP
>Mature_242_residues
ARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDY
KFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFTS
YTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGTDKPKIS
LP

Specific function: Unknown

COG id: COG1471

COG function: function code J; Ribosomal protein S4E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI88703062, Length=245, Percent_Identity=36.734693877551, Blast_Score=143, Evalue=2e-34,
Organism=Homo sapiens, GI4506727, Length=245, Percent_Identity=36.734693877551, Blast_Score=142, Evalue=4e-34,
Organism=Homo sapiens, GI4506725, Length=250, Percent_Identity=35.2, Blast_Score=141, Evalue=5e-34,
Organism=Caenorhabditis elegans, GI17543386, Length=242, Percent_Identity=38.0165289256198, Blast_Score=159, Evalue=2e-39,
Organism=Saccharomyces cerevisiae, GI6322605, Length=245, Percent_Identity=37.1428571428571, Blast_Score=147, Evalue=2e-36,
Organism=Saccharomyces cerevisiae, GI6321997, Length=245, Percent_Identity=37.1428571428571, Blast_Score=147, Evalue=2e-36,
Organism=Drosophila melanogaster, GI24663672, Length=245, Percent_Identity=36.3265306122449, Blast_Score=149, Evalue=2e-36,
Organism=Drosophila melanogaster, GI24663668, Length=245, Percent_Identity=36.3265306122449, Blast_Score=149, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005824
- InterPro:   IPR000876
- InterPro:   IPR022994
- InterPro:   IPR013845
- InterPro:   IPR013843
- InterPro:   IPR018199
- InterPro:   IPR002942
- ProDom:   PD002667 [H]

Pfam domain/function: PF00467 KOW; PF00900 Ribosomal_S4e; PF08071 RS4NT; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 28146; Mature: 28015

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS50889 S4 ; PS00528 RIBOSOMAL_S4E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAR
CCCCCHHHHHHHHCCCCHHEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
EARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEA
HHHHHHHCCCEEEECEECCCCCCCCCHHHEECCCCCCCCEEECHHHCCCEEECCCCCCHH
FIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFTSYTVLMKVPEREILEVLPFE
HHHHHHHCCCEEECCEEEEEEEECCCCEEEEEECCCCCEEEEEEEEECCHHHHHHHCCCC
KGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGTDKPKI
CCCEEEEECCCCHHHCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHCEEEEECCCCCC
SLP
CCC
>Mature Secondary Structure 
ARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAR
CCCCHHHHHHHHCCCCHHEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
EARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEA
HHHHHHHCCCEEEECEECCCCCCCCCHHHEECCCCCCCCEEECHHHCCCEEECCCCCCHH
FIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFTSYTVLMKVPEREILEVLPFE
HHHHHHHCCCEEECCEEEEEEEECCCCEEEEEECCCCCEEEEEEEEECCHHHHHHHCCCC
KGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGTDKPKI
CCCEEEEECCCCHHHCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHCEEEEECCCCCC
SLP
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]