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The map label for this gene is 18977942

Identifier: 18977942

GI number: 18977942

Start: 1466681

End: 1467391

Strand: Reverse

Name: 18977942

Synonym: PF1570

Alternate gene names: NA

Gene position: 1467391-1466681 (Counterclockwise)

Preceding gene: 18977943

Following gene: 18977941

Centisome position: 76.9

GC content: 39.38

Gene sequence:

>711_bases
ATGCCAATTAGTGTTGATAAGGCTGTGATCGCAAGATTAAAAATTCATGGAGAAGTTTTTGAAATATTGGTCGATCCTTA
TCTTGCTAGAGACTTTAGAGAAGGTAAGGATGTTCCAATAGAAGAAATTTTAGCAACTCCATATGTGTTTAAGGATGCTC
ACAAGGGCGATAAAGCTAGTGAGCATGAAATGGAGAAAATTTTTGGAACAAGTGATCCTTATGAAGTAGCTAAGATAATT
TTAAGAAAAGGGGAAATCCAGCTCACTGCTCAACAGAGAAGAGAGATGCTTGAGGAAAAGAAGAGGCAAATAGCTACTAT
AATTCATAGAAATGCAGTAGATCCAAGAACTGGATATCCACATCCAGTAGAGAGAATTCTTAGGGCTATGGAAGAAGTGG
GAGTGAGAGTGGATATATTCAAAGATGCGGAAGCCCAAGTTCAAGATGTTATAAAAGCAATTCGACAAGTTCTCCCGCTT
AGAATTGAGACAAAGGTAATAGCAGTTAAGATCCCAGGGGAGTACGTGGGTAAAGCCTATGGTGAAGTAAGAAAGTTTGG
AACAATTAAGAAGGAGGAGTGGGGCAGTGATGGTTCTTGGATGTTCTTAATTGAAATCCCAGGTGGAGTTGAGGAGGAGT
TTTACGAGAAGCTAAATGCCCTTACAAAGAGCAGTGCTCAAACTAAACTAATAGAGAGGAAGGGGTTATGA

Upstream 100 bases:

>100_bases
AGAAGTTGAAGAGGAAGAAGTCAAGGAAAAGGAAGAGGATTATTCGGAGCTGGATAGCAACTACTGACTTTTCTCTAATT
TTTATTTGGAGGTGGTGGGA

Downstream 100 bases:

>100_bases
GGAGAATTTTTGTTCAAAATAGAGAATTAGTAGTACCTGGAACGCTATTGGCCCAAGGGCCTTATAAAAATGGGAGAGGA
ACTTTCAAAGAAGGTTCAAG

Product: putative RNA-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MPISVDKAVIARLKIHGEVFEILVDPYLARDFREGKDVPIEEILATPYVFKDAHKGDKASEHEMEKIFGTSDPYEVAKII
LRKGEIQLTAQQRREMLEEKKRQIATIIHRNAVDPRTGYPHPVERILRAMEEVGVRVDIFKDAEAQVQDVIKAIRQVLPL
RIETKVIAVKIPGEYVGKAYGEVRKFGTIKKEEWGSDGSWMFLIEIPGGVEEEFYEKLNALTKSSAQTKLIERKGL

Sequences:

>Translated_236_residues
MPISVDKAVIARLKIHGEVFEILVDPYLARDFREGKDVPIEEILATPYVFKDAHKGDKASEHEMEKIFGTSDPYEVAKII
LRKGEIQLTAQQRREMLEEKKRQIATIIHRNAVDPRTGYPHPVERILRAMEEVGVRVDIFKDAEAQVQDVIKAIRQVLPL
RIETKVIAVKIPGEYVGKAYGEVRKFGTIKKEEWGSDGSWMFLIEIPGGVEEEFYEKLNALTKSSAQTKLIERKGL
>Mature_235_residues
PISVDKAVIARLKIHGEVFEILVDPYLARDFREGKDVPIEEILATPYVFKDAHKGDKASEHEMEKIFGTSDPYEVAKIIL
RKGEIQLTAQQRREMLEEKKRQIATIIHRNAVDPRTGYPHPVERILRAMEEVGVRVDIFKDAEAQVQDVIKAIRQVLPLR
IETKVIAVKIPGEYVGKAYGEVRKFGTIKKEEWGSDGSWMFLIEIPGGVEEEFYEKLNALTKSSAQTKLIERKGL

Specific function: Unknown

COG id: COG1500

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SDO1/SBDS family [H]

Homologues:

Organism=Homo sapiens, GI28416940, Length=158, Percent_Identity=32.9113924050633, Blast_Score=88, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI25144459, Length=216, Percent_Identity=25.9259259259259, Blast_Score=84, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6323050, Length=175, Percent_Identity=29.1428571428571, Blast_Score=77, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24659572, Length=208, Percent_Identity=26.4423076923077, Blast_Score=87, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009022
- InterPro:   IPR018978
- InterPro:   IPR018023
- InterPro:   IPR019783
- InterPro:   IPR002140 [H]

Pfam domain/function: PF01172 SBDS; PF09377 SBDS_C [H]

EC number: NA

Molecular weight: Translated: 26925; Mature: 26793

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS01267 UPF0023

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPISVDKAVIARLKIHGEVFEILVDPYLARDFREGKDVPIEEILATPYVFKDAHKGDKAS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHCCCCCCCCH
EHEMEKIFGTSDPYEVAKIILRKGEIQLTAQQRREMLEEKKRQIATIIHRNAVDPRTGYP
HHHHHHHCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
HPVERILRAMEEVGVRVDIFKDAEAQVQDVIKAIRQVLPLRIETKVIAVKIPGEYVGKAY
CHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCHHHHHHHH
GEVRKFGTIKKEEWGSDGSWMFLIEIPGGVEEEFYEKLNALTKSSAQTKLIERKGL
HHHHHHCCCCHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PISVDKAVIARLKIHGEVFEILVDPYLARDFREGKDVPIEEILATPYVFKDAHKGDKAS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHCCCCCCCCH
EHEMEKIFGTSDPYEVAKIILRKGEIQLTAQQRREMLEEKKRQIATIIHRNAVDPRTGYP
HHHHHHHCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
HPVERILRAMEEVGVRVDIFKDAEAQVQDVIKAIRQVLPLRIETKVIAVKIPGEYVGKAY
CHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCHHHHHHHH
GEVRKFGTIKKEEWGSDGSWMFLIEIPGGVEEEFYEKLNALTKSSAQTKLIERKGL
HHHHHHCCCCHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]