Click here to switch to the map view.

The map label for this gene is rpl30e [H]

Identifier: 18977933

GI number: 18977933

Start: 1455396

End: 1455695

Strand: Reverse

Name: rpl30e [H]

Synonym: PF1561

Alternate gene names: 18977933

Gene position: 1455695-1455396 (Counterclockwise)

Preceding gene: 18977934

Following gene: 18977932

Centisome position: 76.28

GC content: 41.0

Gene sequence:

>300_bases
ATGGATTTAGCATTTGAGCTTAGAAAAGCTATGGAAACTGGAAAAGTTGTCCTCGGTTCTAATGAAACAATTAGGTTAGC
AAAGACTGGAGGAGCAAAGCTAATTATAGTGGCAAAGAATGCTCCCAAGGAAATAAAGGATGACATCTACTACTACGCAA
AGCTCAGTGACATCCCAGTTTATGAGTTTGAAGGAACAAGTGTTGAACTTGGAACCCTTTTAGGAAAGCCATTTGTGGTG
GCATCCCTTGCAATTGTTGACCCAGGAGAAAGCAAGATTCTAGCAATAGCCAAGAGGTGA

Upstream 100 bases:

>100_bases
CGTCTTAATCGGGCAGCCCGTTCCAGTGGGAACGGGCATGGTTAAGTTAACTATGAAACTACCACTAAGACCACAGAAAG
AAAAGGAGGAGGTGTGATAG

Downstream 100 bases:

>100_bases
GTTGAGAAATGCCACTAAAATTAACGACTGACCAAATAAAGTACATAGCTCTTTTCGAGAGCTTTACGGGAGCTACAGTG
CTGGATTGTTTAATTGATCA

Product: 50S ribosomal protein L30e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MDLAFELRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVV
ASLAIVDPGESKILAIAKR

Sequences:

>Translated_99_residues
MDLAFELRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVV
ASLAIVDPGESKILAIAKR
>Mature_99_residues
MDLAFELRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVV
ASLAIVDPGESKILAIAKR

Specific function: Unknown

COG id: COG1911

COG function: function code J; Ribosomal protein L30E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30e family [H]

Homologues:

Organism=Homo sapiens, GI4506631, Length=89, Percent_Identity=43.8202247191011, Blast_Score=85, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17508679, Length=93, Percent_Identity=39.7849462365591, Blast_Score=76, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6321408, Length=84, Percent_Identity=42.8571428571429, Blast_Score=69, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17864264, Length=84, Percent_Identity=44.047619047619, Blast_Score=81, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24585096, Length=84, Percent_Identity=44.047619047619, Blast_Score=81, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000231
- InterPro:   IPR022991
- InterPro:   IPR004038 [H]

Pfam domain/function: PF01248 Ribosomal_L7Ae [H]

EC number: NA

Molecular weight: Translated: 10714; Mature: 10714

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS00993 RIBOSOMAL_L30E_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLAFELRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPV
CCHHHHHHHHHHCCCEEECCCCEEEEEECCCEEEEEEECCCCCCCCCCEEEEEEECCCEE
YEFEGTSVELGTLLGKPFVVASLAIVDPGESKILAIAKR
EEECCCEEEEHHHCCCCCCEEEEEEECCCCCEEEEEEEC
>Mature Secondary Structure
MDLAFELRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPV
CCHHHHHHHHHHCCCEEECCCCEEEEEECCCEEEEEEECCCCCCCCCCEEEEEEECCCEE
YEFEGTSVELGTLLGKPFVVASLAIVDPGESKILAIAKR
EEECCCEEEEHHHCCCCCCEEEEEEECCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]