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The map label for this gene is nusA

Identifier: 18977932

GI number: 18977932

Start: 1454950

End: 1455387

Strand: Reverse

Name: nusA

Synonym: PF1560

Alternate gene names: NA

Gene position: 1455387-1454950 (Counterclockwise)

Preceding gene: 18977933

Following gene: 18977931

Centisome position: 76.27

GC content: 37.9

Gene sequence:

>438_bases
ATGCCACTAAAATTAACGACTGACCAAATAAAGTACATAGCTCTTTTCGAGAGCTTTACGGGAGCTACAGTGCTGGATTG
TTTAATTGATCAAGAGAGGAATAAGCTAATTTATGTCATAAAGAAGGGGGAAATGGGTTTAGCCTTAGGAAGAGGGGGAA
TAAACGTAAGAAGGATAGAGGGATTAATTGGAAAGGAAATCGATTTAGTTGAACATTCAGAGAACCCAGAGGAATTCATA
AAGAACATCTACAGAACAATGGGCGTAAAGGTTAAAAAAGTCCATATAACTGAAAAGAGAGACGGTAAGAAAGTTGCCCT
CCTTGATGTTAACCCACGTGATAAGCCGAGAGCAATCGGAAGAGGGGGACGTAACATTAATATTGTTAAACAGTTAATGG
AAAGACACCATGGGATTGAAGATGTAATAATAATTTGA

Upstream 100 bases:

>100_bases
TTGGAACCCTTTTAGGAAAGCCATTTGTGGTGGCATCCCTTGCAATTGTTGACCCAGGAGAAAGCAAGATTCTAGCAATA
GCCAAGAGGTGAGTTGAGAA

Downstream 100 bases:

>100_bases
GGGTGAGATCATGCCTGGTAAGAAAGCTCCAAATGGTGAATTTGCTGGTAGAAAACTCAAGCTCAAGAGAAAGAAGTTTA
GGTGGAGCGATATCAGATAC

Product: transcription elongation factor NusA-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MPLKLTTDQIKYIALFESFTGATVLDCLIDQERNKLIYVIKKGEMGLALGRGGINVRRIEGLIGKEIDLVEHSENPEEFI
KNIYRTMGVKVKKVHITEKRDGKKVALLDVNPRDKPRAIGRGGRNINIVKQLMERHHGIEDVIII

Sequences:

>Translated_145_residues
MPLKLTTDQIKYIALFESFTGATVLDCLIDQERNKLIYVIKKGEMGLALGRGGINVRRIEGLIGKEIDLVEHSENPEEFI
KNIYRTMGVKVKKVHITEKRDGKKVALLDVNPRDKPRAIGRGGRNINIVKQLMERHHGIEDVIII
>Mature_144_residues
PLKLTTDQIKYIALFESFTGATVLDCLIDQERNKLIYVIKKGEMGLALGRGGINVRRIEGLIGKEIDLVEHSENPEEFIK
NIYRTMGVKVKKVHITEKRDGKKVALLDVNPRDKPRAIGRGGRNINIVKQLMERHHGIEDVIII

Specific function: Unknown

COG id: COG0195

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR004044
- InterPro:   IPR010212 [H]

Pfam domain/function: PF07650 KH_2 [H]

EC number: NA

Molecular weight: Translated: 16455; Mature: 16324

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLKLTTDQIKYIALFESFTGATVLDCLIDQERNKLIYVIKKGEMGLALGRGGINVRRIE
CCCCCCHHHEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCEEEECCCCCCCEEEH
GLIGKEIDLVEHSENPEEFIKNIYRTMGVKVKKVHITEKRDGKKVALLDVNPRDKPRAIG
HHCCCEEEEEECCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEEECCCCCCCHHHC
RGGRNINIVKQLMERHHGIEDVIII
CCCCCHHHHHHHHHHHCCCCEEEEC
>Mature Secondary Structure 
PLKLTTDQIKYIALFESFTGATVLDCLIDQERNKLIYVIKKGEMGLALGRGGINVRRIE
CCCCCHHHEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCEEEECCCCCCCEEEH
GLIGKEIDLVEHSENPEEFIKNIYRTMGVKVKKVHITEKRDGKKVALLDVNPRDKPRAIG
HHCCCEEEEEECCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEEECCCCCCCHHHC
RGGRNINIVKQLMERHHGIEDVIII
CCCCCHHHHHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1840672 [H]