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The map label for this gene is ybbK [C]

Identifier: 18977906

GI number: 18977906

Start: 1432096

End: 1432905

Strand: Direct

Name: ybbK [C]

Synonym: PF1534

Alternate gene names: 18977906

Gene position: 1432096-1432905 (Clockwise)

Preceding gene: 18977905

Following gene: 18977911

Centisome position: 75.05

GC content: 42.47

Gene sequence:

>810_bases
ATGGCCACGCCAATAGGGTTTTTTACTGCAGCAATAATTTTGTTATTTATTTTGATTTTCCTTTCAAGTGCAATAAAGAT
AGTAAAGGAATATGAGAGGGCGGTGATATTCAGGCTAGGTAGAGTTGTAGGAGCAAGAGGACCAGGATTGTTCTTCATAA
TCCCAATATTCGAAAAGGCCGTAATAGTGGATCTTAGAACTCAAGTACTTGACGTCCCCGTCCAGGAGACAATAACCAAG
GACAACGTTCCAGTTAGAGTAAATGCTGTAGTTTACTTCAGGGTCGTTGATCCTGTTAAAGCTGTCACCCAAGTAAAGAA
CTACATTATGGCAACCTCTCAGATTTCTCAGACGACATTGAGAAGTGTAATAGGTCAGGCCCACCTGGATGAACTCCTCA
GTGAAAGAGATAAGCTCAACATGCAACTTCAAAGAATAATCGATGAGGCAACGGATCCATGGGGAATAAAAGTAACAGCT
GTAGAGATTAAGGACGTGGAGCTACCAGCAGGAATGCAGAGAGCCATGGCAAAGCAGGCTGAAGCTGAGAGAGAAAGAAG
AGCAAGGATTCTATTGGCAGAAGCTGAAAGGCAGGCAGCTGAGAAGCTTAGAGAAGCTGCAAGAATTATAAGCGAGCACC
CAATGGCACTGCAACTTAGAACTCTCCAAACGATAAGCGACGTGGCAAGTGACAAGAGCAATGTTATTGTTCTCACCCTA
CCAATGGAAATGCTAAAGTTATTCAAGACACTTAGTGAAGCTGCAGAAGCATACAGAGAAAAAGTTGAAAAAGAGAAAGA
AAAAGAGTGA

Upstream 100 bases:

>100_bases
AGGATGGAGAAAAAATAGAGAAAGGTGAAAAGGTAAAAGTTGTGGGAATGGAAGGCTTGACCCTTATTGTTGTTAGAAAG
AAAGAGGAGGGTGGTAAGTG

Downstream 100 bases:

>100_bases
ACCTCTACTCTTTCTTTTCAATATCTTTCCATTTTATGTAACCACCCAGGAGGAATTTTGTAGGTAGCATTGGGTGGTGG
GCATAGATTCTAAGCTTGTA

Product: stomatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MATPIGFFTAAIILLFILIFLSSAIKIVKEYERAVIFRLGRVVGARGPGLFFIIPIFEKAVIVDLRTQVLDVPVQETITK
DNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTA
VEIKDVELPAGMQRAMAKQAEAERERRARILLAEAERQAAEKLREAARIISEHPMALQLRTLQTISDVASDKSNVIVLTL
PMEMLKLFKTLSEAAEAYREKVEKEKEKE

Sequences:

>Translated_269_residues
MATPIGFFTAAIILLFILIFLSSAIKIVKEYERAVIFRLGRVVGARGPGLFFIIPIFEKAVIVDLRTQVLDVPVQETITK
DNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTA
VEIKDVELPAGMQRAMAKQAEAERERRARILLAEAERQAAEKLREAARIISEHPMALQLRTLQTISDVASDKSNVIVLTL
PMEMLKLFKTLSEAAEAYREKVEKEKEKE
>Mature_268_residues
ATPIGFFTAAIILLFILIFLSSAIKIVKEYERAVIFRLGRVVGARGPGLFFIIPIFEKAVIVDLRTQVLDVPVQETITKD
NVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAV
EIKDVELPAGMQRAMAKQAEAERERRARILLAEAERQAAEKLREAARIISEHPMALQLRTLQTISDVASDKSNVIVLTLP
MEMLKLFKTLSEAAEAYREKVEKEKEKE

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=249, Percent_Identity=48.5943775100402, Blast_Score=219, Evalue=2e-57,
Organism=Homo sapiens, GI21686995, Length=244, Percent_Identity=45.0819672131148, Blast_Score=202, Evalue=3e-52,
Organism=Homo sapiens, GI221316744, Length=244, Percent_Identity=45.0819672131148, Blast_Score=202, Evalue=3e-52,
Organism=Homo sapiens, GI7657615, Length=252, Percent_Identity=38.4920634920635, Blast_Score=171, Evalue=6e-43,
Organism=Homo sapiens, GI7305503, Length=188, Percent_Identity=35.6382978723404, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI20149563, Length=155, Percent_Identity=35.4838709677419, Blast_Score=96, Evalue=4e-20,
Organism=Escherichia coli, GI1786697, Length=189, Percent_Identity=42.3280423280423, Blast_Score=157, Evalue=7e-40,
Organism=Caenorhabditis elegans, GI17569493, Length=242, Percent_Identity=47.5206611570248, Blast_Score=219, Evalue=1e-57,
Organism=Caenorhabditis elegans, GI193209764, Length=242, Percent_Identity=47.5206611570248, Blast_Score=219, Evalue=1e-57,
Organism=Caenorhabditis elegans, GI17570459, Length=243, Percent_Identity=47.7366255144033, Blast_Score=217, Evalue=4e-57,
Organism=Caenorhabditis elegans, GI25153583, Length=244, Percent_Identity=47.9508196721311, Blast_Score=217, Evalue=5e-57,
Organism=Caenorhabditis elegans, GI71987612, Length=244, Percent_Identity=47.9508196721311, Blast_Score=217, Evalue=6e-57,
Organism=Caenorhabditis elegans, GI71987621, Length=244, Percent_Identity=47.9508196721311, Blast_Score=216, Evalue=1e-56,
Organism=Caenorhabditis elegans, GI17569499, Length=227, Percent_Identity=50.2202643171806, Blast_Score=211, Evalue=3e-55,
Organism=Caenorhabditis elegans, GI71989948, Length=235, Percent_Identity=47.2340425531915, Blast_Score=208, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI17569497, Length=252, Percent_Identity=41.2698412698413, Blast_Score=201, Evalue=3e-52,
Organism=Caenorhabditis elegans, GI32566490, Length=239, Percent_Identity=47.6987447698745, Blast_Score=197, Evalue=4e-51,
Organism=Caenorhabditis elegans, GI193210507, Length=254, Percent_Identity=43.7007874015748, Blast_Score=197, Evalue=5e-51,
Organism=Caenorhabditis elegans, GI17570161, Length=254, Percent_Identity=43.7007874015748, Blast_Score=197, Evalue=5e-51,
Organism=Caenorhabditis elegans, GI71989955, Length=188, Percent_Identity=50, Blast_Score=172, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI32564147, Length=183, Percent_Identity=39.8907103825137, Blast_Score=133, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI71989963, Length=118, Percent_Identity=52.5423728813559, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17542664, Length=162, Percent_Identity=29.0123456790123, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI45556022, Length=245, Percent_Identity=52.6530612244898, Blast_Score=237, Evalue=5e-63,
Organism=Drosophila melanogaster, GI18860517, Length=253, Percent_Identity=49.4071146245059, Blast_Score=231, Evalue=3e-61,
Organism=Drosophila melanogaster, GI24657857, Length=250, Percent_Identity=48.4, Blast_Score=221, Evalue=3e-58,
Organism=Drosophila melanogaster, GI281365664, Length=250, Percent_Identity=48.4, Blast_Score=221, Evalue=5e-58,
Organism=Drosophila melanogaster, GI62484448, Length=250, Percent_Identity=48.4, Blast_Score=221, Evalue=5e-58,
Organism=Drosophila melanogaster, GI62484274, Length=250, Percent_Identity=48.4, Blast_Score=220, Evalue=8e-58,
Organism=Drosophila melanogaster, GI21356845, Length=245, Percent_Identity=38.7755102040816, Blast_Score=201, Evalue=5e-52,
Organism=Drosophila melanogaster, GI281361633, Length=245, Percent_Identity=40.4081632653061, Blast_Score=192, Evalue=2e-49,
Organism=Drosophila melanogaster, GI281361631, Length=245, Percent_Identity=40.4081632653061, Blast_Score=192, Evalue=2e-49,
Organism=Drosophila melanogaster, GI28573263, Length=244, Percent_Identity=38.1147540983607, Blast_Score=185, Evalue=2e-47,
Organism=Drosophila melanogaster, GI281361635, Length=184, Percent_Identity=40.2173913043478, Blast_Score=149, Evalue=2e-36,
Organism=Drosophila melanogaster, GI45550506, Length=186, Percent_Identity=37.0967741935484, Blast_Score=129, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 30296; Mature: 30165

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS01270 BAND_7

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPIGFFTAAIILLFILIFLSSAIKIVKEYERAVIFRLGRVVGARGPGLFFIIPIFEKA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHH
VIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTL
HHHHHHHHHHCCCHHHHHCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
RSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQRAMAKQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHH
EAERERRARILLAEAERQAAEKLREAARIISEHPMALQLRTLQTISDVASDKSNVIVLTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
PMEMLKLFKTLSEAAEAYREKVEKEKEKE
CHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATPIGFFTAAIILLFILIFLSSAIKIVKEYERAVIFRLGRVVGARGPGLFFIIPIFEKA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHH
VIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTL
HHHHHHHHHHCCCHHHHHCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
RSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQRAMAKQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHH
EAERERRARILLAEAERQAAEKLREAARIISEHPMALQLRTLQTISDVASDKSNVIVLTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
PMEMLKLFKTLSEAAEAYREKVEKEKEKE
CHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]