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The map label for this gene is soxA [H]

Identifier: 18977617

GI number: 18977617

Start: 1178445

End: 1179923

Strand: Direct

Name: soxA [H]

Synonym: PF1245

Alternate gene names: 18977617

Gene position: 1178445-1179923 (Clockwise)

Preceding gene: 18977613

Following gene: 18977618

Centisome position: 61.76

GC content: 41.92

Gene sequence:

>1479_bases
GTGAGAAACTTGAGGCCACTAGACTTAACGGAAAAGAAGAAGAAAAAAGTTAGGATATATTTCGAAGGGAAGGAACTGGA
AGCCTATGAAGGAGAAAAATTGCCCGTTGCACTATTGGCCAATGGAATATACTGGCTAACAACAAGCCTAGAAGGAAGAA
AAAGGGGGGCATTTACCTTTGGTCCAGTCCCAATGATCATAAATGGAGTAAAGGGTGTCGATGCTAGGAAAACAAAGGTT
AAAGATGGAATGAAAGTACAAAGACAAACCTACGGTGATTTTCACGAAGAACCACTTCCACAGGATGGAGAAGTAAAACA
AGTTGTGGTTGATGTTTTAGTAATTGGCGGTGGCCCCGCAGGGCTGGGAGCTGTTCTTGAGATGCAGGAACACCTAAACG
TTGCACTAGTTGAGGAGAAAGGCTGGTTAGGTGGGGATATGTTTTTAAAGACTTCAACAGCGGAGGGCTTTGAAGAAAGC
TCAAGAAAAGTCGTTGATAAGCTCGCTAAAGAAGTTAAAGCTAATGTATATCTTGGCACAGTTGCCCTGGGAGTTTTTGA
TAAAGGGGAATACTTTCTAGTTCCAGCAACTAAAGGAAATAATCTAATAGAATTTCTGGCTAAAAGGGTAGTTTTAGCTA
CTGGTGCGGTGGATAACATAATGCTCTTTGAAAACAACGACATGCCTGGGGTCTTTAGGCGTGATTTTGCGCTTGAGGTA
ATGAACGTTTGGGAAGTAGCTCCAGGTTGGAATGTAGCTGTTACTGGAAGTAAGGCGGAGGAAGTAATATATGAACTCGA
GAGATGGGGAATTGATTACGTAGAGGTGCCCTCTGTAAAAAGGGTTGAAGGGAAAGAGAAGGTTGAGAAGGTTATTGACT
TCAATGGAAATGAGTACAAGGTTGATGCAATAATATTTGCTGATGGTAAAAGGCCTGACATAAATCCCATTACCCAGGCA
GGAGGAAAATTACACTTTAGGAGGGGATATTATAGGCCCGTTGTAAATGAATATAACCAGATTAGAGAGGGGGTATATGT
AGCAGGCAGTGCAGTGACGATAAAGCCCCACTATACAAATTACCTGGAAGGAAGGCTAGTTGGAGCATATATTCTTAGGG
AATTTGGAATAGATTCAGAACCATGCATATACAAAGAAAAGCTTAAGGAATTTGAACCTGAAGCTCTTCCTGTGCCAAAA
ATCCCAATAAACAAGCTGAACTTGGATGACGTCCAGATATGTGGATGTGATGTCTCCTTAAGAAAGGTATATGATGTAGT
CGAAAAGGGCATAACAGATCTTCAAATAATTAAAAGGTTAACCCATCTAGCTATGGGCTTTTGCCAGGGACGTTTCTGCC
TCTTCAATGGGGCAGCAGTTGTTTCCCAGGTTACGGGAATTAAGCTAGGTGAAATAGACCTACCTGTGGCAAGGCCCCCA
ATAAAAACCGTAAAGTTAGGAATTCTATCTAGGAGGTGA

Upstream 100 bases:

>100_bases
TCTGAAGCGTTAAAATTGAAAAAATTTTCATTAATTATATTCCAATTTCTTTATAAGACATTTCTCGAAATATTTGCTTG
GAATAAATTATTTCAAAGAG

Downstream 100 bases:

>100_bases
GAGGGATGATTCCAGAAAAAAGTGAAATTGTCGTGATTGGTGGGGGTATTGTTGGAGTTACGATAGCTCATGAGCTCGCT
AAGAGAGGAGAAGAAGTTAC

Product: d-nopaline dehydrogenase

Products: NA

Alternate protein names: Sarcosine oxidase subunit [H]

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MRNLRPLDLTEKKKKKVRIYFEGKELEAYEGEKLPVALLANGIYWLTTSLEGRKRGAFTFGPVPMIINGVKGVDARKTKV
KDGMKVQRQTYGDFHEEPLPQDGEVKQVVVDVLVIGGGPAGLGAVLEMQEHLNVALVEEKGWLGGDMFLKTSTAEGFEES
SRKVVDKLAKEVKANVYLGTVALGVFDKGEYFLVPATKGNNLIEFLAKRVVLATGAVDNIMLFENNDMPGVFRRDFALEV
MNVWEVAPGWNVAVTGSKAEEVIYELERWGIDYVEVPSVKRVEGKEKVEKVIDFNGNEYKVDAIIFADGKRPDINPITQA
GGKLHFRRGYYRPVVNEYNQIREGVYVAGSAVTIKPHYTNYLEGRLVGAYILREFGIDSEPCIYKEKLKEFEPEALPVPK
IPINKLNLDDVQICGCDVSLRKVYDVVEKGITDLQIIKRLTHLAMGFCQGRFCLFNGAAVVSQVTGIKLGEIDLPVARPP
IKTVKLGILSRR

Sequences:

>Translated_492_residues
MRNLRPLDLTEKKKKKVRIYFEGKELEAYEGEKLPVALLANGIYWLTTSLEGRKRGAFTFGPVPMIINGVKGVDARKTKV
KDGMKVQRQTYGDFHEEPLPQDGEVKQVVVDVLVIGGGPAGLGAVLEMQEHLNVALVEEKGWLGGDMFLKTSTAEGFEES
SRKVVDKLAKEVKANVYLGTVALGVFDKGEYFLVPATKGNNLIEFLAKRVVLATGAVDNIMLFENNDMPGVFRRDFALEV
MNVWEVAPGWNVAVTGSKAEEVIYELERWGIDYVEVPSVKRVEGKEKVEKVIDFNGNEYKVDAIIFADGKRPDINPITQA
GGKLHFRRGYYRPVVNEYNQIREGVYVAGSAVTIKPHYTNYLEGRLVGAYILREFGIDSEPCIYKEKLKEFEPEALPVPK
IPINKLNLDDVQICGCDVSLRKVYDVVEKGITDLQIIKRLTHLAMGFCQGRFCLFNGAAVVSQVTGIKLGEIDLPVARPP
IKTVKLGILSRR
>Mature_492_residues
MRNLRPLDLTEKKKKKVRIYFEGKELEAYEGEKLPVALLANGIYWLTTSLEGRKRGAFTFGPVPMIINGVKGVDARKTKV
KDGMKVQRQTYGDFHEEPLPQDGEVKQVVVDVLVIGGGPAGLGAVLEMQEHLNVALVEEKGWLGGDMFLKTSTAEGFEES
SRKVVDKLAKEVKANVYLGTVALGVFDKGEYFLVPATKGNNLIEFLAKRVVLATGAVDNIMLFENNDMPGVFRRDFALEV
MNVWEVAPGWNVAVTGSKAEEVIYELERWGIDYVEVPSVKRVEGKEKVEKVIDFNGNEYKVDAIIFADGKRPDINPITQA
GGKLHFRRGYYRPVVNEYNQIREGVYVAGSAVTIKPHYTNYLEGRLVGAYILREFGIDSEPCIYKEKLKEFEPEALPVPK
IPINKLNLDDVQICGCDVSLRKVYDVVEKGITDLQIIKRLTHLAMGFCQGRFCLFNGAAVVSQVTGIKLGEIDLPVARPP
IKTVKLGILSRR

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG0446

COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcvT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR013977
- InterPro:   IPR006222
- InterPro:   IPR006277 [H]

Pfam domain/function: PF01571 GCV_T; PF08669 GCV_T_C; PF07992 Pyr_redox_2 [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 54870; Mature: 54870

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLRPLDLTEKKKKKVRIYFEGKELEAYEGEKLPVALLANGIYWLTTSLEGRKRGAFTF
CCCCCCCCCCCCCCCEEEEEEECCEEECCCCCCCCHHHHHCCEEEEEECCCCCCCCCEEE
GPVPMIINGVKGVDARKTKVKDGMKVQRQTYGDFHEEPLPQDGEVKQVVVDVLVIGGGPA
CCHHHHEECCCCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHEEEEEEEECCCCC
GLGAVLEMQEHLNVALVEEKGWLGGDMFLKTSTAEGFEESSRKVVDKLAKEVKANVYLGT
CHHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEE
VALGVFDKGEYFLVPATKGNNLIEFLAKRVVLATGAVDNIMLFENNDMPGVFRRDFALEV
EEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHH
MNVWEVAPGWNVAVTGSKAEEVIYELERWGIDYVEVPSVKRVEGKEKVEKVIDFNGNEYK
HHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCEEECCCCHHCCCHHHHHHHHCCCCCEEE
VDAIIFADGKRPDINPITQAGGKLHFRRGYYRPVVNEYNQIREGVYVAGSAVTIKPHYTN
EEEEEEECCCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHCCEEEECCEEEECCCCCC
YLEGRLVGAYILREFGIDSEPCIYKEKLKEFEPEALPVPKIPINKLNLDDVQICGCDVSL
HHCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHH
RKVYDVVEKGITDLQIIKRLTHLAMGFCQGRFCLFNGAAVVSQVTGIKLGEIDLPVARPP
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCEECCCCCCCCCCC
IKTVKLGILSRR
HHHEEEEEECCC
>Mature Secondary Structure
MRNLRPLDLTEKKKKKVRIYFEGKELEAYEGEKLPVALLANGIYWLTTSLEGRKRGAFTF
CCCCCCCCCCCCCCCEEEEEEECCEEECCCCCCCCHHHHHCCEEEEEECCCCCCCCCEEE
GPVPMIINGVKGVDARKTKVKDGMKVQRQTYGDFHEEPLPQDGEVKQVVVDVLVIGGGPA
CCHHHHEECCCCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHEEEEEEEECCCCC
GLGAVLEMQEHLNVALVEEKGWLGGDMFLKTSTAEGFEESSRKVVDKLAKEVKANVYLGT
CHHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEE
VALGVFDKGEYFLVPATKGNNLIEFLAKRVVLATGAVDNIMLFENNDMPGVFRRDFALEV
EEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHH
MNVWEVAPGWNVAVTGSKAEEVIYELERWGIDYVEVPSVKRVEGKEKVEKVIDFNGNEYK
HHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCEEECCCCHHCCCHHHHHHHHCCCCCEEE
VDAIIFADGKRPDINPITQAGGKLHFRRGYYRPVVNEYNQIREGVYVAGSAVTIKPHYTN
EEEEEEECCCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHCCEEEECCEEEECCCCCC
YLEGRLVGAYILREFGIDSEPCIYKEKLKEFEPEALPVPKIPINKLNLDDVQICGCDVSL
HHCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHH
RKVYDVVEKGITDLQIIKRLTHLAMGFCQGRFCLFNGAAVVSQVTGIKLGEIDLPVARPP
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCEECCCCCCCCCCC
IKTVKLGILSRR
HHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]