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The map label for this gene is asnC [C]

Identifier: 18977603

GI number: 18977603

Start: 1164067

End: 1164513

Strand: Reverse

Name: asnC [C]

Synonym: PF1231

Alternate gene names: 18977603

Gene position: 1164513-1164067 (Counterclockwise)

Preceding gene: 18977605

Following gene: 18977602

Centisome position: 61.02

GC content: 37.58

Gene sequence:

>447_bases
ATGCTGGATGAGCTAGATAAGAGGATACTATACTTTCTCCAAGAAGACGGGAGAAGAAGTTATTCAGAAATAGCAAGGAT
TCTAGGAGTTCCAGAATCAACTGTAAGAGTTAGAGTAAAGAAGATGCTAAAAAATGGTATCATAAGGAAATTTGCAGCAC
TAATAAATCCATTTAAAGCAGGCTATGAAATAGTTGCGGTAATAGCTGTAGATGTAGAGCCAAACAAAGTTAGAGAAGTA
GCAGAAAAGTTAGCAGAGCTGAATGAAGTTGACGTGTTAGGAATAGCTACCGGAGCTCACGATATATTCATGCAAGTCAC
AGTAAAAAGCCTCAGAGAACTTGAGGAATTTCTCCTAGATAAGCTTGGAAAAATAGAAGGAATTAAAAGCACAGAAACCT
CAATCCTAACAAGTGTAAAGAAGTGGGGATATGCAAGGGTATTCTAG

Upstream 100 bases:

>100_bases
TTTTTCGCAAAAAGTCAATAATCTTTTCCCCAAATTTTTGCTAATTCGATATAAATATTTATATAGAAATTGCTGATTAC
TCAAATTTATGAGAGAAAAT

Downstream 100 bases:

>100_bases
GAGGGGAAATATGATGATTATCTTAAAACCCCTCATTGAAGTTGATCTTCCAGAAGACTTTGTCGACATAATAAAAGCAA
AATTGAAGGGCCAAACGGTC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MLDELDKRILYFLQEDGRRSYSEIARILGVPESTVRVRVKKMLKNGIIRKFAALINPFKAGYEIVAVIAVDVEPNKVREV
AEKLAELNEVDVLGIATGAHDIFMQVTVKSLRELEEFLLDKLGKIEGIKSTETSILTSVKKWGYARVF

Sequences:

>Translated_148_residues
MLDELDKRILYFLQEDGRRSYSEIARILGVPESTVRVRVKKMLKNGIIRKFAALINPFKAGYEIVAVIAVDVEPNKVREV
AEKLAELNEVDVLGIATGAHDIFMQVTVKSLRELEEFLLDKLGKIEGIKSTETSILTSVKKWGYARVF
>Mature_148_residues
MLDELDKRILYFLQEDGRRSYSEIARILGVPESTVRVRVKKMLKNGIIRKFAALINPFKAGYEIVAVIAVDVEPNKVREV
AEKLAELNEVDVLGIATGAHDIFMQVTVKSLRELEEFLLDKLGKIEGIKSTETSILTSVKKWGYARVF

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1790182, Length=137, Percent_Identity=35.036496350365, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): REG3_PYRFU (Q8U1H7)

Other databases:

- EMBL:   AE009950
- RefSeq:   NP_578960.1
- ProteinModelPortal:   Q8U1H7
- SMR:   Q8U1H7
- EnsemblBacteria:   EBPYRT00000005555
- GeneID:   1469103
- GenomeReviews:   AE009950_GR
- KEGG:   pfu:PF1231
- NMPDR:   fig|186497.1.peg.1274
- GeneTree:   EBGT00050000022216
- HOGENOM:   HBG740878
- OMA:   FAALINP
- ProtClustDB:   CLSK253118
- GO:   GO:0005622
- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR013249
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00033
- SMART:   SM00344

Pfam domain/function: PF01037 AsnC_trans_reg; PF08281 Sigma70_r4_2; SSF54909 Dimer_A_B_barrel

EC number: NA

Molecular weight: Translated: 16753; Mature: 16753

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS00519 HTH_ASNC_1; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDELDKRILYFLQEDGRRSYSEIARILGVPESTVRVRVKKMLKNGIIRKFAALINPFKA
CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GYEIVAVIAVDVEPNKVREVAEKLAELNEVDVLGIATGAHDIFMQVTVKSLRELEEFLLD
CCEEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
KLGKIEGIKSTETSILTSVKKWGYARVF
HHHHHCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLDELDKRILYFLQEDGRRSYSEIARILGVPESTVRVRVKKMLKNGIIRKFAALINPFKA
CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GYEIVAVIAVDVEPNKVREVAEKLAELNEVDVLGIATGAHDIFMQVTVKSLRELEEFLLD
CCEEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
KLGKIEGIKSTETSILTSVKKWGYARVF
HHHHHCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA