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The map label for this gene is ygcB [C]

Identifier: 18977492

GI number: 18977492

Start: 1067761

End: 1069935

Strand: Reverse

Name: ygcB [C]

Synonym: PF1120

Alternate gene names: 18977492

Gene position: 1069935-1067761 (Counterclockwise)

Preceding gene: 33359543

Following gene: 18977491

Centisome position: 56.07

GC content: 39.82

Gene sequence:

>2175_bases
ATGAAACCGTGCTTTGCAAAATTTCTTCCACATGACTTCCTAGAGTGTCACGTCATGGACATAATAAATGTTCTCAAAAG
CATGAAAGTAGCTTTCCCCTGGTTGGAGGGTATATTCCCAGAAGTCTGGACGCTGGCATTTTACGCAATTGTTCTCCACG
ACCTGGGAAAGTGTGCTTTAGGTTTCCAAAAGAACCCAAAAAAGTGGGGATATAGGCATGAGATTCTCTCCACCCCATTT
ATTCAATTTTTGGACTTCAAGGACGAGCACAAAATGTTGATAGGCTTGTCTATTCTAACCCACCATAGACCGATAAGCGA
GGTAAAGAATTACATTCCGATTGAAGGGTACAGGGAAGCATATGAAGAAAAAGTTGAAGAGCTACTTGAAAATAGAGAGT
ACATCGAACTGTACTTCTCAAGAGTTCCTCTTTGGGAAATATACGTGTTTGGAGAAAGGAAGGATTTCTTTGTATTGCCA
AAGAATTGGGAGGAGAAGATAAGAAACTTTCGGTTTGAGGAGTTATTGGATTGGTACGAGGATAAAGTAAATGAGTTTAA
GGATTATATGACAGTTTTAAAGGGCCTATTAAATGCTTGTGACCATCTAGCCTCTGCAGGAGGAACCACAATAAGATTCC
TTCCAGACATAGAGGAACTTGTAGAGATGAAAATCCCAAGGGGAAAGTGGAGACCTCTCCAACTTTTATCCTCTACAACA
GAGGGGAACGCAATTCTTTATGCTCCAACAGGTTATGGAAAGACTGAAGCGGCCCTTCTATGGGCAAATAAAAATGCTCA
CAAAGTTAAGAAGGGGATATCAAGCAGAATATTCTACATTCTTCCCTATAAGGCCAGCATAAATGCCATGCATAGAAGGT
TGTTGGAGATGTTTAAAGACCCAGGATTAGTTGGCCTTCTCCACAGCTCATCAGGGATTTATCTTTATTCATCTTCATTG
GAACACAAAAGGTTGCAATCTCTCTATGGAAAGATCTACTCCCCACTGAAGATCACAACACCTTTCCAAATAATGAAGGC
ATTTTTTGGAGTTGGATTCTTTGAAATAACATTAGTGGAGCTAATGAACTCTCTATTAATTTTTGACGAGATTCACGCAT
ATGAGCCCAACATCCTGGGAATTATACTAGCTATGCTAGAACTGCTAAAGGATAAAAACGTGAAAGTTCTCGTAATGACG
GCTACTTTTCCAAAATTTTTGGAAGAGCTAATAAAATCGGTCTTAAATCCTAAAGAGCTCAAAACACCTCCAGAAGAGGC
CGATAAATTCACGAGACATAGGGTGAACATAATTGAAGGAGATATACAGAGTCTAGACTCGGAGGAATTTTCTGGGCCAA
GGCCTACATTGATTGCTTGTAACACCGTTAACACTGCCATAGATGTGTATTCAAGACTCAAAGAGAGCGGAGCAAACGTC
ATGCTAATCCATGGGAGATTTACATACGGTGATAGAGAAGAGAAAGAAAAAAGGCTAATGAGCTCTCTAAATAATTATGA
CTTCGTAGTTGCTACTCAAGTGATAGAGGTTTCTCTCGACATAGACTTTGGAAGCATCATTACAGAACCGGCCCCACTTG
ACGCTCTAATTCAAAGGTTTGGAAGGGTAAACAGAAGAGGATTTGGGAATCCTAGAGATGTTTATGTGTTGACGAAGGGG
AGTGAGGATGATAAGAAAGTGTACAAACCCTACGAAGTTGTTGAGGAGACCGTAAAGATACTTAGAGATTTAGATGGGAA
GGAGCTTAAAGAGTCCTTAATTCCATCATTGATAACTGAAGCATACGAGAAAGAAGAGAAGAAAATAGTCAGTAAAGTCC
TTGAGTACAAAGAAGATGCTCTAAATCTGTTTAAGGATATAAGACCTATGGATAGTTATATAAAGGGAGAAACCGCATTC
TACGAACTATTTGGTGGACTTGAAGCAATTCCAGGAGCTTATCAGCATAAGGCAGATGAACTCCTAAAGAAGGGATATTA
CATGGAAGTTCACAAGTATCTGGTCCCTATTCCATATTGGCTATTCTTTTCTGAGCAGGAAAACTTTCATAGACTCTCAG
ATAGAGGGCCTGGGAGATATTTACTTGTTGCTGAATTAGATTATTCACCCGAAATGGGTTTATTAAGAAAACCCCGTGAG
GGGGATATTCTCTAA

Upstream 100 bases:

>100_bases
TTCCCTTCCCTAGAAATATGGGAGAAAGGAAAAGACAAACGGCAAAGGCCTTATATGATCCTGATTTAGACATAGGAGTT
TATCTGCATAGGTGGAGGCC

Downstream 100 bases:

>100_bases
TGGAAGAGTACGCCTTAGAGGAGCTGTTTGTTAGGGGAATTGAGATCAACTATCTCTATGTTTGTCCAACTAAGCTATGG
TTTTTTACACATGGGATAAC

Product: ATP-dependent RNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 724; Mature: 724

Protein sequence:

>724_residues
MKPCFAKFLPHDFLECHVMDIINVLKSMKVAFPWLEGIFPEVWTLAFYAIVLHDLGKCALGFQKNPKKWGYRHEILSTPF
IQFLDFKDEHKMLIGLSILTHHRPISEVKNYIPIEGYREAYEEKVEELLENREYIELYFSRVPLWEIYVFGERKDFFVLP
KNWEEKIRNFRFEELLDWYEDKVNEFKDYMTVLKGLLNACDHLASAGGTTIRFLPDIEELVEMKIPRGKWRPLQLLSSTT
EGNAILYAPTGYGKTEAALLWANKNAHKVKKGISSRIFYILPYKASINAMHRRLLEMFKDPGLVGLLHSSSGIYLYSSSL
EHKRLQSLYGKIYSPLKITTPFQIMKAFFGVGFFEITLVELMNSLLIFDEIHAYEPNILGIILAMLELLKDKNVKVLVMT
ATFPKFLEELIKSVLNPKELKTPPEEADKFTRHRVNIIEGDIQSLDSEEFSGPRPTLIACNTVNTAIDVYSRLKESGANV
MLIHGRFTYGDREEKEKRLMSSLNNYDFVVATQVIEVSLDIDFGSIITEPAPLDALIQRFGRVNRRGFGNPRDVYVLTKG
SEDDKKVYKPYEVVEETVKILRDLDGKELKESLIPSLITEAYEKEEKKIVSKVLEYKEDALNLFKDIRPMDSYIKGETAF
YELFGGLEAIPGAYQHKADELLKKGYYMEVHKYLVPIPYWLFFSEQENFHRLSDRGPGRYLLVAELDYSPEMGLLRKPRE
GDIL

Sequences:

>Translated_724_residues
MKPCFAKFLPHDFLECHVMDIINVLKSMKVAFPWLEGIFPEVWTLAFYAIVLHDLGKCALGFQKNPKKWGYRHEILSTPF
IQFLDFKDEHKMLIGLSILTHHRPISEVKNYIPIEGYREAYEEKVEELLENREYIELYFSRVPLWEIYVFGERKDFFVLP
KNWEEKIRNFRFEELLDWYEDKVNEFKDYMTVLKGLLNACDHLASAGGTTIRFLPDIEELVEMKIPRGKWRPLQLLSSTT
EGNAILYAPTGYGKTEAALLWANKNAHKVKKGISSRIFYILPYKASINAMHRRLLEMFKDPGLVGLLHSSSGIYLYSSSL
EHKRLQSLYGKIYSPLKITTPFQIMKAFFGVGFFEITLVELMNSLLIFDEIHAYEPNILGIILAMLELLKDKNVKVLVMT
ATFPKFLEELIKSVLNPKELKTPPEEADKFTRHRVNIIEGDIQSLDSEEFSGPRPTLIACNTVNTAIDVYSRLKESGANV
MLIHGRFTYGDREEKEKRLMSSLNNYDFVVATQVIEVSLDIDFGSIITEPAPLDALIQRFGRVNRRGFGNPRDVYVLTKG
SEDDKKVYKPYEVVEETVKILRDLDGKELKESLIPSLITEAYEKEEKKIVSKVLEYKEDALNLFKDIRPMDSYIKGETAF
YELFGGLEAIPGAYQHKADELLKKGYYMEVHKYLVPIPYWLFFSEQENFHRLSDRGPGRYLLVAELDYSPEMGLLRKPRE
GDIL
>Mature_724_residues
MKPCFAKFLPHDFLECHVMDIINVLKSMKVAFPWLEGIFPEVWTLAFYAIVLHDLGKCALGFQKNPKKWGYRHEILSTPF
IQFLDFKDEHKMLIGLSILTHHRPISEVKNYIPIEGYREAYEEKVEELLENREYIELYFSRVPLWEIYVFGERKDFFVLP
KNWEEKIRNFRFEELLDWYEDKVNEFKDYMTVLKGLLNACDHLASAGGTTIRFLPDIEELVEMKIPRGKWRPLQLLSSTT
EGNAILYAPTGYGKTEAALLWANKNAHKVKKGISSRIFYILPYKASINAMHRRLLEMFKDPGLVGLLHSSSGIYLYSSSL
EHKRLQSLYGKIYSPLKITTPFQIMKAFFGVGFFEITLVELMNSLLIFDEIHAYEPNILGIILAMLELLKDKNVKVLVMT
ATFPKFLEELIKSVLNPKELKTPPEEADKFTRHRVNIIEGDIQSLDSEEFSGPRPTLIACNTVNTAIDVYSRLKESGANV
MLIHGRFTYGDREEKEKRLMSSLNNYDFVVATQVIEVSLDIDFGSIITEPAPLDALIQRFGRVNRRGFGNPRDVYVLTKG
SEDDKKVYKPYEVVEETVKILRDLDGKELKESLIPSLITEAYEKEEKKIVSKVLEYKEDALNLFKDIRPMDSYIKGETAF
YELFGGLEAIPGAYQHKADELLKKGYYMEVHKYLVPIPYWLFFSEQENFHRLSDRGPGRYLLVAELDYSPEMGLLRKPRE
GDIL

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1789119, Length=433, Percent_Identity=27.7136258660508, Blast_Score=123, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD [H]

EC number: NA

Molecular weight: Translated: 83926; Mature: 83926

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPCFAKFLPHDFLECHVMDIINVLKSMKVAFPWLEGIFPEVWTLAFYAIVLHDLGKCAL
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFQKNPKKWGYRHEILSTPFIQFLDFKDEHKMLIGLSILTHHRPISEVKNYIPIEGYREA
CCCCCCCCCCCHHHHHCCCHHHHHCCCCCCHHEEEHHHHHCCCCHHHHHCCCCCCHHHHH
YEEKVEELLENREYIELYFSRVPLWEIYVFGERKDFFVLPKNWEEKIRNFRFEELLDWYE
HHHHHHHHHHCCHHHHHHHHHCCEEEEEEEECCCCEEEECCCHHHHHHCCCHHHHHHHHH
DKVNEFKDYMTVLKGLLNACDHLASAGGTTIRFLPDIEELVEMKIPRGKWRPLQLLSSTT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCHHHHHHCCC
EGNAILYAPTGYGKTEAALLWANKNAHKVKKGISSRIFYILPYKASINAMHRRLLEMFKD
CCCEEEEECCCCCCCCEEEEEECCCHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCC
PGLVGLLHSSSGIYLYSSSLEHKRLQSLYGKIYSPLKITTPFQIMKAFFGVGFFEITLVE
CCEEEEEECCCCEEEEECCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCHHHHHHHH
LMNSLLIFDEIHAYEPNILGIILAMLELLKDKNVKVLVMTATFPKFLEELIKSVLNPKEL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCHHC
KTPPEEADKFTRHRVNIIEGDIQSLDSEEFSGPRPTLIACNTVNTAIDVYSRLKESGANV
CCCHHHHHHHHHHHHHHEECHHHHCCCHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCCE
MLIHGRFTYGDREEKEKRLMSSLNNYDFVVATQVIEVSLDIDFGSIITEPAPLDALIQRF
EEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCHHHHHCCCCCHHHHHHHH
GRVNRRGFGNPRDVYVLTKGSEDDKKVYKPYEVVEETVKILRDLDGKELKESLIPSLITE
HCCCCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AYEKEEKKIVSKVLEYKEDALNLFKDIRPMDSYIKGETAFYELFGGLEAIPGAYQHKADE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCHHHCCCHHHHHHHH
LLKKGYYMEVHKYLVPIPYWLFFSEQENFHRLSDRGPGRYLLVAELDYSPEMGLLRKPRE
HHHCCCHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCC
GDIL
CCCC
>Mature Secondary Structure
MKPCFAKFLPHDFLECHVMDIINVLKSMKVAFPWLEGIFPEVWTLAFYAIVLHDLGKCAL
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFQKNPKKWGYRHEILSTPFIQFLDFKDEHKMLIGLSILTHHRPISEVKNYIPIEGYREA
CCCCCCCCCCCHHHHHCCCHHHHHCCCCCCHHEEEHHHHHCCCCHHHHHCCCCCCHHHHH
YEEKVEELLENREYIELYFSRVPLWEIYVFGERKDFFVLPKNWEEKIRNFRFEELLDWYE
HHHHHHHHHHCCHHHHHHHHHCCEEEEEEEECCCCEEEECCCHHHHHHCCCHHHHHHHHH
DKVNEFKDYMTVLKGLLNACDHLASAGGTTIRFLPDIEELVEMKIPRGKWRPLQLLSSTT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCHHHHHHCCC
EGNAILYAPTGYGKTEAALLWANKNAHKVKKGISSRIFYILPYKASINAMHRRLLEMFKD
CCCEEEEECCCCCCCCEEEEEECCCHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCC
PGLVGLLHSSSGIYLYSSSLEHKRLQSLYGKIYSPLKITTPFQIMKAFFGVGFFEITLVE
CCEEEEEECCCCEEEEECCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCHHHHHHHH
LMNSLLIFDEIHAYEPNILGIILAMLELLKDKNVKVLVMTATFPKFLEELIKSVLNPKEL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCHHC
KTPPEEADKFTRHRVNIIEGDIQSLDSEEFSGPRPTLIACNTVNTAIDVYSRLKESGANV
CCCHHHHHHHHHHHHHHEECHHHHCCCHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCCE
MLIHGRFTYGDREEKEKRLMSSLNNYDFVVATQVIEVSLDIDFGSIITEPAPLDALIQRF
EEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCHHHHHCCCCCHHHHHHHH
GRVNRRGFGNPRDVYVLTKGSEDDKKVYKPYEVVEETVKILRDLDGKELKESLIPSLITE
HCCCCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AYEKEEKKIVSKVLEYKEDALNLFKDIRPMDSYIKGETAFYELFGGLEAIPGAYQHKADE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCHHHCCCHHHHHHHH
LLKKGYYMEVHKYLVPIPYWLFFSEQENFHRLSDRGPGRYLLVAELDYSPEMGLLRKPRE
HHHCCCHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCC
GDIL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]