Click here to switch to the map view.

The map label for this gene is 18977404

Identifier: 18977404

GI number: 18977404

Start: 988026

End: 989195

Strand: Reverse

Name: 18977404

Synonym: PF1032

Alternate gene names: NA

Gene position: 989195-988026 (Counterclockwise)

Preceding gene: 18977405

Following gene: 18977403

Centisome position: 51.84

GC content: 39.74

Gene sequence:

>1170_bases
ATGACAATGAGGGTATGCTATAGATGTGGAATATCGGAAGAAGAAGGCGGACCCTTGATTAATGGGTTGTGTCAAGTCTG
CTTCAGGAAGGAGAACCCAGTTTTGCTTCTTCCCTCTGAAATTAATACTGAATTATGTCAAAACTGTGGAAGTTATAAAA
AGAGGGGAGTATGGATAGATCCGCAAAATTACGAGCTAGAAAGCTTGATATTTGAAGTGGCTGAAAATGCCTTGCTTGAA
GCATTGGAGGAATCTTTAGATAAAGTTAAGGAATTTGAAGTTGTTCCTTGGGAAGAACTTGAAAATATAAACAATATTCC
AGTGGGAAAGGCATTTGTGGGTTTTATTCCTGTTGACTATCATATCCAGTACTTTCCCGCAGTAATAGTTTATAGGGTAA
GGGTAAAGGCAAGGTTGCATGAACTACAACTTGAACCTCATGATGAAATAAAGGAGACAACTGTATATGTTAGGCAAACT
GTTTGTCCCAGGTGCCAAAGATTTTTAGCGGGCTATTATGAGGCTATTCTTCAAGTGAGAGTTGAGGACAGGGAATTCAC
TAAAGAGGAGAGAGAAGCAGTAACAAAATTAGTTCAGGAAAAGGTTGATGAGATAATGAAAAAGGACAGAATGGGGTTTA
TCCAAGATACCATAGAGAAAGAGGAGGGAATTGACTTCTACATGGGCTCCACAAGTGCCGCTAGAAAGCTTGCAAATGTA
ATAAGGGAGCACTTCGGAGGAGAGATAAGTGAAGCGTACGAGTTAGTCGGGCTAGATAGAATGACAAGCAAAGAGGTATA
CAGGACCAGCGTTACAGTAAGGCTTCCAAAGTTCAGGAGGGGAGATATAGTAGAGGATAGACACGGTAGAATATACAAGG
TAGAAAACGTTAGTGGAAAAGGAATGAGGCTCAAGAACTTAGAAACCTGGGAAAGCCAGCATTATGACTGGAAAACAATA
AAGAGGGAAAAAATTGATAAGGCGGAGCATGAAGAGAAAAAGGCTCTCTTAATAAGTCAAACCCCTAGAGAAGCTCAGTT
CATGGATATGTCAACATATGAAACCTTTGAAGTTTTAAAACCAGGGGTTAATCTAGAAGAAGGACAATTGTATAGGCTCG
TTAAAGTTAAGGGGAGATTTTACATAAAGGAAAAGGAGGGTGAAGAATGA

Upstream 100 bases:

>100_bases
GCTATGACTGGTGGTTCTGCTACAAGAAGCTTGAGTGATCTCTCTTTTATTATCTTTTCTGAAGTAATATTTTTAACTTG
GCATCTTACATTCTTTCGAG

Downstream 100 bases:

>100_bases
GTAAGATGATAATTATATATACAACTTTTCCTACCTGGGAAAGTGCAGAAAAAGTTACAAAGGCTCTTTTAGAAGAGAGG
CTTGTTGCATGTGCTAATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MTMRVCYRCGISEEEGGPLINGLCQVCFRKENPVLLLPSEINTELCQNCGSYKKRGVWIDPQNYELESLIFEVAENALLE
ALEESLDKVKEFEVVPWEELENINNIPVGKAFVGFIPVDYHIQYFPAVIVYRVRVKARLHELQLEPHDEIKETTVYVRQT
VCPRCQRFLAGYYEAILQVRVEDREFTKEEREAVTKLVQEKVDEIMKKDRMGFIQDTIEKEEGIDFYMGSTSAARKLANV
IREHFGGEISEAYELVGLDRMTSKEVYRTSVTVRLPKFRRGDIVEDRHGRIYKVENVSGKGMRLKNLETWESQHYDWKTI
KREKIDKAEHEEKKALLISQTPREAQFMDMSTYETFEVLKPGVNLEEGQLYRLVKVKGRFYIKEKEGEE

Sequences:

>Translated_389_residues
MTMRVCYRCGISEEEGGPLINGLCQVCFRKENPVLLLPSEINTELCQNCGSYKKRGVWIDPQNYELESLIFEVAENALLE
ALEESLDKVKEFEVVPWEELENINNIPVGKAFVGFIPVDYHIQYFPAVIVYRVRVKARLHELQLEPHDEIKETTVYVRQT
VCPRCQRFLAGYYEAILQVRVEDREFTKEEREAVTKLVQEKVDEIMKKDRMGFIQDTIEKEEGIDFYMGSTSAARKLANV
IREHFGGEISEAYELVGLDRMTSKEVYRTSVTVRLPKFRRGDIVEDRHGRIYKVENVSGKGMRLKNLETWESQHYDWKTI
KREKIDKAEHEEKKALLISQTPREAQFMDMSTYETFEVLKPGVNLEEGQLYRLVKVKGRFYIKEKEGEE
>Mature_388_residues
TMRVCYRCGISEEEGGPLINGLCQVCFRKENPVLLLPSEINTELCQNCGSYKKRGVWIDPQNYELESLIFEVAENALLEA
LEESLDKVKEFEVVPWEELENINNIPVGKAFVGFIPVDYHIQYFPAVIVYRVRVKARLHELQLEPHDEIKETTVYVRQTV
CPRCQRFLAGYYEAILQVRVEDREFTKEEREAVTKLVQEKVDEIMKKDRMGFIQDTIEKEEGIDFYMGSTSAARKLANVI
REHFGGEISEAYELVGLDRMTSKEVYRTSVTVRLPKFRRGDIVEDRHGRIYKVENVSGKGMRLKNLETWESQHYDWKTIK
REKIDKAEHEEKKALLISQTPREAQFMDMSTYETFEVLKPGVNLEEGQLYRLVKVKGRFYIKEKEGEE

Specific function: Unknown

COG id: COG1499

COG function: function code J; NMD protein affecting ribosome stability and mRNA decay

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007064 [H]

Pfam domain/function: PF04981 NMD3 [H]

EC number: NA

Molecular weight: Translated: 45506; Mature: 45375

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMRVCYRCGISEEEGGPLINGLCQVCFRKENPVLLLPSEINTELCQNCGSYKKRGVWID
CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCHHHCCEEEC
PQNYELESLIFEVAENALLEALEESLDKVKEFEVVPWEELENINNIPVGKAFVGFIPVDY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHEEEEEECH
HIQYFPAVIVYRVRVKARLHELQLEPHDEIKETTVYVRQTVCPRCQRFLAGYYEAILQVR
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEDREFTKEEREAVTKLVQEKVDEIMKKDRMGFIQDTIEKEEGIDFYMGSTSAARKLANV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCHHHHHHHHHH
IREHFGGEISEAYELVGLDRMTSKEVYRTSVTVRLPKFRRGDIVEDRHGRIYKVENVSGK
HHHHHCCCHHHHHHHHCCCHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCEEEEECCCCC
GMRLKNLETWESQHYDWKTIKREKIDKAEHEEKKALLISQTPREAQFMDMSTYETFEVLK
CEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHCCCCHHHHHHHHC
PGVNLEEGQLYRLVKVKGRFYIKEKEGEE
CCCCCCCCCEEEEEEECCEEEEECCCCCC
>Mature Secondary Structure 
TMRVCYRCGISEEEGGPLINGLCQVCFRKENPVLLLPSEINTELCQNCGSYKKRGVWID
CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCHHHCCEEEC
PQNYELESLIFEVAENALLEALEESLDKVKEFEVVPWEELENINNIPVGKAFVGFIPVDY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHEEEEEECH
HIQYFPAVIVYRVRVKARLHELQLEPHDEIKETTVYVRQTVCPRCQRFLAGYYEAILQVR
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEDREFTKEEREAVTKLVQEKVDEIMKKDRMGFIQDTIEKEEGIDFYMGSTSAARKLANV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCHHHHHHHHHH
IREHFGGEISEAYELVGLDRMTSKEVYRTSVTVRLPKFRRGDIVEDRHGRIYKVENVSGK
HHHHHCCCHHHHHHHHCCCHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCEEEEECCCCC
GMRLKNLETWESQHYDWKTIKREKIDKAEHEEKKALLISQTPREAQFMDMSTYETFEVLK
CEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHCCCCHHHHHHHHC
PGVNLEEGQLYRLVKVKGRFYIKEKEGEE
CCCCCCCCCEEEEEEECCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]