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The map label for this gene is ycgM [C]

Identifier: 18977388

GI number: 18977388

Start: 972838

End: 973521

Strand: Reverse

Name: ycgM [C]

Synonym: PF1016

Alternate gene names: 18977388

Gene position: 973521-972838 (Counterclockwise)

Preceding gene: 18977389

Following gene: 33359533

Centisome position: 51.02

GC content: 43.71

Gene sequence:

>684_bases
ATGAGTTTTGTTAGGCTTCCTTTTAGAGATAGCTATTATGAGCTAAGGCCAACCAAGATAATAGCTCTAGCAAAGAACTA
TGCAGAGCATGCAAAAGAGATGGGTGACAATCCACCCACCGAGCCCATAATATTTCTTAAGCCTCCTTCAGCACTAATTG
GCCCAGGAGAGCCCATTATACTTCCAAAGATTAGCAAGAGAGTAGACCACGAAGTAGAATTGGGAGTAATTATAGGGAAG
AAAGCCAAGAAAGTTCCTGCAGAAAAGGCTTTTGACTATGTGTTGGGTTATACAATTATTCTCGACATAACCGCTAGGGA
TCTTCAGGAGAAAGCTAGAAAAATGGGACACCCATGGACTGTATCTAAGGGGTTTGACACATTTGCTCCCGTTGGTCCGA
GGATAGTTGACAAGAGAGAGCTAGATCCCTCAGACTTGGAGATAGGACTAAAAGTTAACGGGGAAGTTAGACAGCTTGGA
AGGACTAGCCAGATGATATTCAAGATTCCTCAGCTCATCGAATACATATCTAATATAATGACCCTCGAGCCGGGAGATAT
AATTGCTACTGGAACTCCTCCTGGGGTAGGGTCATTGAGGCATGGTGACCACATTGAGGCGTGGATAGAAGGAATAGGAA
AGGTCGAGTTCGACGTTTTAGCTGAGGATTCTATCTTATGCTGA

Upstream 100 bases:

>100_bases
TTGCAGAAGTAGACATCTCATTAGTAAGAAACAAGAGGATAAACGATTTAAATGATATCTTCAAGGATAGGAGGCCGGAA
TATTACTTTAGGTGATGAGC

Downstream 100 bases:

>100_bases
CTAATTTTTTGTTTATGATATTTGTGGAAATGATGTTTCGTGCCTTAAATCTGTCATGTAGCTTGCCTGCATTTTTGCAC
TGGGGTTTGTTGGCAAGAGC

Product: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MSFVRLPFRDSYYELRPTKIIALAKNYAEHAKEMGDNPPTEPIIFLKPPSALIGPGEPIILPKISKRVDHEVELGVIIGK
KAKKVPAEKAFDYVLGYTIILDITARDLQEKARKMGHPWTVSKGFDTFAPVGPRIVDKRELDPSDLEIGLKVNGEVRQLG
RTSQMIFKIPQLIEYISNIMTLEPGDIIATGTPPGVGSLRHGDHIEAWIEGIGKVEFDVLAEDSILC

Sequences:

>Translated_227_residues
MSFVRLPFRDSYYELRPTKIIALAKNYAEHAKEMGDNPPTEPIIFLKPPSALIGPGEPIILPKISKRVDHEVELGVIIGK
KAKKVPAEKAFDYVLGYTIILDITARDLQEKARKMGHPWTVSKGFDTFAPVGPRIVDKRELDPSDLEIGLKVNGEVRQLG
RTSQMIFKIPQLIEYISNIMTLEPGDIIATGTPPGVGSLRHGDHIEAWIEGIGKVEFDVLAEDSILC
>Mature_226_residues
SFVRLPFRDSYYELRPTKIIALAKNYAEHAKEMGDNPPTEPIIFLKPPSALIGPGEPIILPKISKRVDHEVELGVIIGKK
AKKVPAEKAFDYVLGYTIILDITARDLQEKARKMGHPWTVSKGFDTFAPVGPRIVDKRELDPSDLEIGLKVNGEVRQLGR
TSQMIFKIPQLIEYISNIMTLEPGDIIATGTPPGVGSLRHGDHIEAWIEGIGKVEFDVLAEDSILC

Specific function: Unknown

COG id: COG0179

COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAH family [H]

Homologues:

Organism=Homo sapiens, GI13654274, Length=201, Percent_Identity=47.2636815920398, Blast_Score=201, Evalue=4e-52,
Organism=Homo sapiens, GI215422413, Length=202, Percent_Identity=47.5247524752475, Blast_Score=201, Evalue=5e-52,
Organism=Homo sapiens, GI66348062, Length=194, Percent_Identity=47.9381443298969, Blast_Score=199, Evalue=2e-51,
Organism=Homo sapiens, GI156231349, Length=206, Percent_Identity=45.6310679611651, Blast_Score=183, Evalue=1e-46,
Organism=Homo sapiens, GI40786394, Length=205, Percent_Identity=44.390243902439, Blast_Score=176, Evalue=2e-44,
Organism=Escherichia coli, GI1787428, Length=195, Percent_Identity=41.5384615384615, Blast_Score=160, Evalue=6e-41,
Organism=Caenorhabditis elegans, GI17557057, Length=202, Percent_Identity=42.5742574257426, Blast_Score=177, Evalue=3e-45,
Organism=Saccharomyces cerevisiae, GI6324161, Length=232, Percent_Identity=36.6379310344828, Blast_Score=150, Evalue=2e-37,
Organism=Drosophila melanogaster, GI28571789, Length=204, Percent_Identity=44.6078431372549, Blast_Score=182, Evalue=2e-46,
Organism=Drosophila melanogaster, GI28572127, Length=213, Percent_Identity=40.8450704225352, Blast_Score=154, Evalue=5e-38,
Organism=Drosophila melanogaster, GI24663695, Length=210, Percent_Identity=38.0952380952381, Blast_Score=137, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002529
- InterPro:   IPR011234 [H]

Pfam domain/function: PF01557 FAA_hydrolase [H]

EC number: NA

Molecular weight: Translated: 25208; Mature: 25076

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFVRLPFRDSYYELRPTKIIALAKNYAEHAKEMGDNPPTEPIIFLKPPSALIGPGEPII
CCEEECCCCCCCEEECCCEEEEHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCEE
LPKISKRVDHEVELGVIIGKKAKKVPAEKAFDYVLGYTIILDITARDLQEKARKMGHPWT
ECCHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHEEEEEEECHHHHHHHHHHCCCCEE
VSKGFDTFAPVGPRIVDKRELDPSDLEIGLKVNGEVRQLGRTSQMIFKIPQLIEYISNIM
ECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHCHHHHHHHHHHHHHHHHHHHE
TLEPGDIIATGTPPGVGSLRHGDHIEAWIEGIGKVEFDVLAEDSILC
EECCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCC
>Mature Secondary Structure 
SFVRLPFRDSYYELRPTKIIALAKNYAEHAKEMGDNPPTEPIIFLKPPSALIGPGEPII
CEEECCCCCCCEEECCCEEEEHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCEE
LPKISKRVDHEVELGVIIGKKAKKVPAEKAFDYVLGYTIILDITARDLQEKARKMGHPWT
ECCHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHEEEEEEECHHHHHHHHHHCCCCEE
VSKGFDTFAPVGPRIVDKRELDPSDLEIGLKVNGEVRQLGRTSQMIFKIPQLIEYISNIM
ECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHCHHHHHHHHHHHHHHHHHHHE
TLEPGDIIATGTPPGVGSLRHGDHIEAWIEGIGKVEFDVLAEDSILC
EECCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]