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The map label for this gene is ycbY [C]

Identifier: 18977374

GI number: 18977374

Start: 958931

End: 960028

Strand: Direct

Name: ycbY [C]

Synonym: PF1002

Alternate gene names: 18977374

Gene position: 958931-960028 (Clockwise)

Preceding gene: 18977370

Following gene: 18977375

Centisome position: 50.25

GC content: 39.25

Gene sequence:

>1098_bases
ATGAAGTTTTTGCTCACAACAGCCCAAGGGATTGAGGATATAGCTAAAAGAGAAGTTTCTCTACTATTAAAAAAGCTTGG
AATTTCGTTTCAAATAGAAGAGAAGCCTTTGGGTATTGAAGGAAGGCTGCTACTTGAAGCTGAAAAAGCTTACTATGTGG
ATGAAAAGGGAAGAAAGAGAGAGTTGAGCATTTCAACTTACCTTAATGAGAATTCCCGACTTCTTCACAGAGTTATTATT
GAGATCGCGAGTGAAAAATTCAATGGGATTGAAAAAGATGAGTCAGAGGAAGCCTTAAAGAGAATTAAGGATTTTGTATC
ATCACTTCCAGTTGAACAGTTCGTAAAGGTAAGTGAAACATTTGCTGTTAGATCATTTAGAAAAGGTGACCACAATATAA
CTAGCATAGATATTGCTAGAACTGTTGGTGAAGCTATTTTTGAGAGGTTATCGCGTTTTGGAACTCCTCTGGTGAATCTT
GATCATCCAGCAGTAATTTTTAGGGCAGAGCTAATTAAAGACGTATTTTTCCTGGGAATTGATACAACTGGAGATAGCTC
ACTTCACAAAAGGCCTTGGAGAGTTTATGATCACCCAGCCCACTTAAAGGCAAGCATAGCAAATGCAATGATAGAGCTTG
CTGAGCTTGATGGAGGGAGTGTTTTGGATCCAATGTGTGGAAGTGGTACAATTCTAATTGAGCTCGCTCTAAGGAGGTAT
TCTGGAGAAATCATTGGAATTGAGAAGTATAGGAAGCACTTAATCGGGGCGGAGATGAACGCTCTTGCCGCGGGAGTTCT
GGACAAAATTAAATTCATCCAAGGGGATGCCACTCAACTTTCTCAATACGTTGACAGTGTTGATTTCGCTATAAGTAACC
TTCCTTATGGGTTGAAGATAGGAAAAAAGAGCATGATTCCAGATCTCTATATGAAGTTTTTTAATGAATTGGCAAAAGTT
TTGGAGAAGCGTGGCGTCTTCATAACTACTGAGAAAAAAGCAATAGAAGAGGCAATAGCCGAGAATGGCTTTGAAATTAT
CCATCACAGGGTGATTGGGCATGGTGGGTTAATGGTTCACTTGTATGTAGTGAAATAG

Upstream 100 bases:

>100_bases
TGTTTAAAGTTTTTTACATATTAAAAGTATTTTTGTATTCAGCCGCTTGAAAATTTAGATTTGAGAAAATTTAAAAGATA
GCCCTAAAGTACTTTGAACT

Downstream 100 bases:

>100_bases
AGAATATATATCTATATAGATTCTTTGTTCAGATATGTTTTATTTCGACAATGCTTATATTTTCTGAATTTTCTCTATTT
CTTGGTGATGTATCGTGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MKFLLTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSISTYLNENSRLLHRVII
EIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKVSETFAVRSFRKGDHNITSIDIARTVGEAIFERLSRFGTPLVNL
DHPAVIFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAELDGGSVLDPMCGSGTILIELALRRY
SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKV
LEKRGVFITTEKKAIEEAIAENGFEIIHHRVIGHGGLMVHLYVVK

Sequences:

>Translated_365_residues
MKFLLTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSISTYLNENSRLLHRVII
EIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKVSETFAVRSFRKGDHNITSIDIARTVGEAIFERLSRFGTPLVNL
DHPAVIFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAELDGGSVLDPMCGSGTILIELALRRY
SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKV
LEKRGVFITTEKKAIEEAIAENGFEIIHHRVIGHGGLMVHLYVVK
>Mature_365_residues
MKFLLTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSISTYLNENSRLLHRVII
EIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKVSETFAVRSFRKGDHNITSIDIARTVGEAIFERLSRFGTPLVNL
DHPAVIFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAELDGGSVLDPMCGSGTILIELALRRY
SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKV
LEKRGVFITTEKKAIEEAIAENGFEIIHHRVIGHGGLMVHLYVVK

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Homo sapiens, GI254553431, Length=121, Percent_Identity=38.8429752066116, Blast_Score=74, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI32566195, Length=274, Percent_Identity=25.9124087591241, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 41000; Mature: 41000

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS51165 THUMP ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFLLTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKR
CCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCEEECCCCCCE
ELSISTYLNENSRLLHRVIIEIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKVSET
EEEEHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
FAVRSFRKGDHNITSIDIARTVGEAIFERLSRFGTPLVNLDHPAVIFRAELIKDVFFLGI
HHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHEEC
DTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAELDGGSVLDPMCGSGTILIELALRRY
CCCCCCCHHCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKI
CCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEE
GKKSMIPDLYMKFFNELAKVLEKRGVFITTEKKAIEEAIAENGFEIIHHRVIGHGGLMVH
CCHHCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCHHHHHHHHHCCCCEEEE
LYVVK
EEEEC
>Mature Secondary Structure
MKFLLTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKR
CCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCEEECCCCCCE
ELSISTYLNENSRLLHRVIIEIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKVSET
EEEEHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
FAVRSFRKGDHNITSIDIARTVGEAIFERLSRFGTPLVNLDHPAVIFRAELIKDVFFLGI
HHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHEEC
DTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAELDGGSVLDPMCGSGTILIELALRRY
CCCCCCCHHCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKI
CCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEE
GKKSMIPDLYMKFFNELAKVLEKRGVFITTEKKAIEEAIAENGFEIIHHRVIGHGGLMVH
CCHHCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCHHHHHHHHHCCCCEEEE
LYVVK
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]