Click here to switch to the map view.

The map label for this gene is rpl34e [H]

Identifier: 18977193

GI number: 18977193

Start: 800043

End: 800312

Strand: Reverse

Name: rpl34e [H]

Synonym: PF0821

Alternate gene names: 18977193

Gene position: 800312-800043 (Counterclockwise)

Preceding gene: 18977197

Following gene: 18977192

Centisome position: 41.94

GC content: 49.63

Gene sequence:

>270_bases
ATGAAGCCAATGTACAGGTCAAGGTCATGGAGAAGGAAGTACGTTAGGACACCTGGGGGAAGAGTTGTAATCCACTTCGA
GAGGAAGAAGCCAAAGATTGCTCACTGTGCAATGTGTGGCAGGCCACTGAACGGAATTCCCAGGGGTAGGCCTGTTGAAA
TGAGAAAGCTACCAAAGACAAAGAAGAGACCCGAGAGGCCAATGCCACACCTCTGCCCTAGGTGCATGCGTAAGGTAATG
AAGGAGCAAATTAGAGCTCAACTCAGCTGA

Upstream 100 bases:

>100_bases
GTATCATGGGTCTTGGCTCCATCTCAGCATCACCTCCATCTCTTGACCGTTGGTTAAATTTAAAAATGCTTAGCTTTAGC
CTAATCCGAGGTGGGAAGTA

Downstream 100 bases:

>100_bases
AGGGGTGCCCCATGCCTAAGGGGTGCCTCGTAATAACTGTTAGTGGTTTAGCTGGTTCGGGTACAACTACCCTATGTAGA
AAGTTGGCCGAGCACTACGG

Product: 50S ribosomal protein L34e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MKPMYRSRSWRRKYVRTPGGRVVIHFERKKPKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMPHLCPRCMRKVM
KEQIRAQLS

Sequences:

>Translated_89_residues
MKPMYRSRSWRRKYVRTPGGRVVIHFERKKPKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMPHLCPRCMRKVM
KEQIRAQLS
>Mature_89_residues
MKPMYRSRSWRRKYVRTPGGRVVIHFERKKPKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMPHLCPRCMRKVM
KEQIRAQLS

Specific function: Unknown

COG id: COG2174

COG function: function code J; Ribosomal protein L34E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L34e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008195
- InterPro:   IPR018065 [H]

Pfam domain/function: PF01199 Ribosomal_L34e [H]

EC number: NA

Molecular weight: Translated: 10647; Mature: 10647

Theoretical pI: Translated: 12.21; Mature: 12.21

Prosite motif: PS01145 RIBOSOMAL_L34E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
7.9 %Met     (Translated Protein)
12.4 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
7.9 %Met     (Mature Protein)
12.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPMYRSRSWRRKYVRTPGGRVVIHFERKKPKIAHCAMCGRPLNGIPRGRPVEMRKLPKT
CCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCHHHHCCCC
KKRPERPMPHLCPRCMRKVMKEQIRAQLS
CCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKPMYRSRSWRRKYVRTPGGRVVIHFERKKPKIAHCAMCGRPLNGIPRGRPVEMRKLPKT
CCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCHHHHCCCC
KKRPERPMPHLCPRCMRKVMKEQIRAQLS
CCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]