Click here to switch to the map view.

The map label for this gene is ydiS [C]

Identifier: 18976469

GI number: 18976469

Start: 104205

End: 105386

Strand: Direct

Name: ydiS [C]

Synonym: PF0097

Alternate gene names: 18976469

Gene position: 104205-105386 (Clockwise)

Preceding gene: 18976468

Following gene: 18976472

Centisome position: 5.46

GC content: 41.37

Gene sequence:

>1182_bases
ATGAAGTACGATGTAGTGGTTGTTGGCTCAGGAGTTGCCGGTCCCATTGTGGCAAGAGACGTTGCAAAAGCTGGTTTTTC
AGTTCTTCTTGTGGATAAAAAACCTGCAATTGGAACTCCAAAACAGTGTGCAGAGGGAATAAATGTTAACGTTTTCAAGG
AATTTGACATTCCATATGATAAAAGGTTCATAAACAGAGAGATTTATGGGGCGAGGATTTACTCTCCTAGTGGATATACG
GCCGAGCTTAGGTATGACAAGGTAAGTGGAGTTATACTTGAGAGAAAAGTCTTTGATAAAATGCTCGCCTATTATGCTGC
AAAGGCTGGAGCTGATGTTTGGGCAAGGACCGAAGTTATCGATCTCCTAAGAAAGGAAGGTAAGATTATGGGGGTTAAGG
CAAAACATGAAGGCGAGTTAGTCGAAATTGAGGCTAAGATAATAGTAGCGGCTGATGGAGTTGAAAGCACAGTTGCAAGG
CTTGCGGGGATAAATACCTATGCTCCTCCCCATGAATTTGATTCAGCGTATGAATACGAAATGATAATCGAAGGATACGA
CCCAGACTTAATTCATTTGTGGTTTGGAAATGAAATTGCTCCTAGAGGATATGTTTGGGTATTTCCAAAAGATGAAGATA
GGGCAAACGTCGGAATTGGAATAAACTCCGACAATGAGAAAACTGCCAAGTACTATCTGGACAAGTGGCTTAAAGAAAAC
AACATTCCCACGAAGAAAATATTGGAGATAAACGTTGGCCTTGTTCCAGTGGGTGGCTTTGTAAGAGAGTTAGTTAAAGA
AAACGTGGCTGTAGTTGGAGATGCCGCCAGGCAAGTAAATCCAGTCCATGGAGGAGGAATGTATGAAGCAATGAAAGCTG
CTAACATTTTGGCAAAGTGGATAGTTAAGGCACTGGAGGAGGAGAATCTAGAACTACTGAAGAACTATACCAAAGAGTGG
TGGGAAGTTGAAGGGCCCAAGATGGAGAGACTACTGAAGCTTAGAAGGGCAATGGAAAAACTAACAGATGAGGACATAGA
TGTTTTCGTTCAATTACTTGGAGGGACTGACTTAGAAAAACTAGCTGGTGGAAATTATTTCGAGGTAGTAAAAGCTCTCA
TGAAGCATCCAAAAGTGTTAATGAGCAAAAGAAGGTTAGAAATACTCAAGGCTCTATTATGA

Upstream 100 bases:

>100_bases
TCTCATCATCATGGCAGTTCTTTGAAGATAAGTGCATTTCTTGTATGATATGCATAAAGGCTTGTCCTGTGGGAGCTCTC
AGTTATGAGGAGGTGGCACA

Downstream 100 bases:

>100_bases
GATCATCAACTTTCGGTCCAATGGGGAGTCTCCTCTTATGCTCGCTGTTTTTCACTAATTTTTCAACGTGTTCTACTATT
TCTTCTGACACATTTAGTTC

Product: 43 kDa subunit bacteriochlorophyll synthase-like protein

Products: NA

Alternate protein names: DGGGPL reductase; 2,3-di-O-geranylgeranylglyceryl phosphate reductase; Geranylgeranyl reductase; GGR

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MKYDVVVVGSGVAGPIVARDVAKAGFSVLLVDKKPAIGTPKQCAEGINVNVFKEFDIPYDKRFINREIYGARIYSPSGYT
AELRYDKVSGVILERKVFDKMLAYYAAKAGADVWARTEVIDLLRKEGKIMGVKAKHEGELVEIEAKIIVAADGVESTVAR
LAGINTYAPPHEFDSAYEYEMIIEGYDPDLIHLWFGNEIAPRGYVWVFPKDEDRANVGIGINSDNEKTAKYYLDKWLKEN
NIPTKKILEINVGLVPVGGFVRELVKENVAVVGDAARQVNPVHGGGMYEAMKAANILAKWIVKALEEENLELLKNYTKEW
WEVEGPKMERLLKLRRAMEKLTDEDIDVFVQLLGGTDLEKLAGGNYFEVVKALMKHPKVLMSKRRLEILKALL

Sequences:

>Translated_393_residues
MKYDVVVVGSGVAGPIVARDVAKAGFSVLLVDKKPAIGTPKQCAEGINVNVFKEFDIPYDKRFINREIYGARIYSPSGYT
AELRYDKVSGVILERKVFDKMLAYYAAKAGADVWARTEVIDLLRKEGKIMGVKAKHEGELVEIEAKIIVAADGVESTVAR
LAGINTYAPPHEFDSAYEYEMIIEGYDPDLIHLWFGNEIAPRGYVWVFPKDEDRANVGIGINSDNEKTAKYYLDKWLKEN
NIPTKKILEINVGLVPVGGFVRELVKENVAVVGDAARQVNPVHGGGMYEAMKAANILAKWIVKALEEENLELLKNYTKEW
WEVEGPKMERLLKLRRAMEKLTDEDIDVFVQLLGGTDLEKLAGGNYFEVVKALMKHPKVLMSKRRLEILKALL
>Mature_393_residues
MKYDVVVVGSGVAGPIVARDVAKAGFSVLLVDKKPAIGTPKQCAEGINVNVFKEFDIPYDKRFINREIYGARIYSPSGYT
AELRYDKVSGVILERKVFDKMLAYYAAKAGADVWARTEVIDLLRKEGKIMGVKAKHEGELVEIEAKIIVAADGVESTVAR
LAGINTYAPPHEFDSAYEYEMIIEGYDPDLIHLWFGNEIAPRGYVWVFPKDEDRANVGIGINSDNEKTAKYYLDKWLKEN
NIPTKKILEINVGLVPVGGFVRELVKENVAVVGDAARQVNPVHGGGMYEAMKAANILAKWIVKALEEENLELLKNYTKEW
WEVEGPKMERLLKLRRAMEKLTDEDIDVFVQLLGGTDLEKLAGGNYFEVVKALMKHPKVLMSKRRLEILKALL

Specific function: Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the geranylgeranyl reductase family. DGGGPL reductase subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GGR_PYRFU (Q8U4J0)

Other databases:

- EMBL:   AE009950
- RefSeq:   NP_577826.1
- ProteinModelPortal:   Q8U4J0
- EnsemblBacteria:   EBPYRT00000004528
- GeneID:   1467926
- GenomeReviews:   AE009950_GR
- KEGG:   pfu:PF0097
- NMPDR:   fig|186497.1.peg.97
- GeneTree:   EBGT00050000023059
- HOGENOM:   HBG626912
- OMA:   VILARND
- ProtClustDB:   CLSK253163
- HAMAP:   MF_01287
- InterPro:   IPR011777
- InterPro:   IPR002938
- InterPro:   IPR003042
- PRINTS:   PR00420
- TIGRFAMs:   TIGR02032

Pfam domain/function: PF01494 FAD_binding_3

EC number: 1.5.5.- [C]

Molecular weight: Translated: 44082; Mature: 44082

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYDVVVVGSGVAGPIVARDVAKAGFSVLLVDKKPAIGTPKQCAEGINVNVFKEFDIPYD
CCEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCEEEEEECCCCHH
KRFINREIYGARIYSPSGYTAELRYDKVSGVILERKVFDKMLAYYAAKAGADVWARTEVI
HHHHCHHHCEEEEECCCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
DLLRKEGKIMGVKAKHEGELVEIEAKIIVAADGVESTVARLAGINTYAPPHEFDSAYEYE
HHHHHCCCEEEEEECCCCCEEEEEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCEEEE
MIIEGYDPDLIHLWFGNEIAPRGYVWVFPKDEDRANVGIGINSDNEKTAKYYLDKWLKEN
EEEECCCCCEEEEEECCCCCCCCEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
NIPTKKILEINVGLVPVGGFVRELVKENVAVVGDAARQVNPVHGGGMYEAMKAANILAKW
CCCCCEEEEEECCEEECCHHHHHHHHCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHHHH
IVKALEEENLELLKNYTKEWWEVEGPKMERLLKLRRAMEKLTDEDIDVFVQLLGGTDLEK
HHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHH
LAGGNYFEVVKALMKHPKVLMSKRRLEILKALL
HCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKYDVVVVGSGVAGPIVARDVAKAGFSVLLVDKKPAIGTPKQCAEGINVNVFKEFDIPYD
CCEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCEEEEEECCCCHH
KRFINREIYGARIYSPSGYTAELRYDKVSGVILERKVFDKMLAYYAAKAGADVWARTEVI
HHHHCHHHCEEEEECCCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
DLLRKEGKIMGVKAKHEGELVEIEAKIIVAADGVESTVARLAGINTYAPPHEFDSAYEYE
HHHHHCCCEEEEEECCCCCEEEEEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCEEEE
MIIEGYDPDLIHLWFGNEIAPRGYVWVFPKDEDRANVGIGINSDNEKTAKYYLDKWLKEN
EEEECCCCCEEEEEECCCCCCCCEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
NIPTKKILEINVGLVPVGGFVRELVKENVAVVGDAARQVNPVHGGGMYEAMKAANILAKW
CCCCCEEEEEECCEEECCHHHHHHHHCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHHHH
IVKALEEENLELLKNYTKEWWEVEGPKMERLLKLRRAMEKLTDEDIDVFVQLLGGTDLEK
HHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHH
LAGGNYFEVVKALMKHPKVLMSKRRLEILKALL
HCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA