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The map label for this gene is 189499212

Identifier: 189499212

GI number: 189499212

Start: 221011

End: 221418

Strand: Direct

Name: 189499212

Synonym: Cphamn1_0232

Alternate gene names: NA

Gene position: 221011-221418 (Clockwise)

Preceding gene: 189499211

Following gene: 189499219

Centisome position: 8.08

GC content: 47.55

Gene sequence:

>408_bases
ATGATTCTTGTTGATACTTCTGTTTGGATAGATCTCTTGAGGGACCGGACAGGGGATGTTGTTCAGGCCTTTGAAAGAAA
GACTCATGGCGAAACATCTGTTTTATGCCGATTTACGCAGCTTGAGCTGTTACAAGGAGCTAAAAGCGAGGAGGACTGGA
AGCTGCTGGACGGACATCTTTCATCACAGCTCTATCTTGAAGCGACGGAAAGAACGTGGTCTGATGCAGCGCGGATATTT
TTCGAACTGAGAAGAAAGGGGATAACAGTGCGGAGCTCAGTAGATTGCTGCATAGCGCAGATTGCCTTGGAACACGATGC
CATTCTTCTTCACAAAGACGCGGATTTTGACCGCATTGCTTCAGTTCGTCCACTCCGTTCCGAATGGTTTCCGGAACAAA
TGGTGTAG

Upstream 100 bases:

>100_bases
TTCTGATCCGCTTGAAAAAACGGAAAGATCTGACGGAACTTGCAGGGAAGGTTGAGTTTTATGAGGATTTTGATTACAAA
AAAATGAGACAGGTCAGGGA

Downstream 100 bases:

>100_bases
TTTAATTTCCCTGCTTTGTTACACAACGGGCATGACAGTGCGGTGTGTATTGATGCTCAGTCGTTTTTTCCTTGAACGAT
TCAACAGCTCAACGCATCAA

Product: PilT protein domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MILVDTSVWIDLLRDRTGDVVQAFERKTHGETSVLCRFTQLELLQGAKSEEDWKLLDGHLSSQLYLEATERTWSDAARIF
FELRRKGITVRSSVDCCIAQIALEHDAILLHKDADFDRIASVRPLRSEWFPEQMV

Sequences:

>Translated_135_residues
MILVDTSVWIDLLRDRTGDVVQAFERKTHGETSVLCRFTQLELLQGAKSEEDWKLLDGHLSSQLYLEATERTWSDAARIF
FELRRKGITVRSSVDCCIAQIALEHDAILLHKDADFDRIASVRPLRSEWFPEQMV
>Mature_135_residues
MILVDTSVWIDLLRDRTGDVVQAFERKTHGETSVLCRFTQLELLQGAKSEEDWKLLDGHLSSQLYLEATERTWSDAARIF
FELRRKGITVRSSVDCCIAQIALEHDAILLHKDADFDRIASVRPLRSEWFPEQMV

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2010 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 15606; Mature: 15606

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILVDTSVWIDLLRDRTGDVVQAFERKTHGETSVLCRFTQLELLQGAKSEEDWKLLDGHL
CEEECHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHC
SSQLYLEATERTWSDAARIFFELRRKGITVRSSVDCCIAQIALEHDAILLHKDADFDRIA
CCEEEEEEHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCCCEEEEECCCCHHHHH
SVRPLRSEWFPEQMV
HCCCHHHHCCCCCCC
>Mature Secondary Structure
MILVDTSVWIDLLRDRTGDVVQAFERKTHGETSVLCRFTQLELLQGAKSEEDWKLLDGHL
CEEECHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHC
SSQLYLEATERTWSDAARIFFELRRKGITVRSSVDCCIAQIALEHDAILLHKDADFDRIA
CCEEEEEEHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCCCEEEEECCCCHHHHH
SVRPLRSEWFPEQMV
HCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]