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The map label for this gene is ydaM [H]

Identifier: 189424367

GI number: 189424367

Start: 1351269

End: 1351982

Strand: Reverse

Name: ydaM [H]

Synonym: Glov_1303

Alternate gene names: 189424367

Gene position: 1351982-1351269 (Counterclockwise)

Preceding gene: 189424379

Following gene: 189424365

Centisome position: 34.51

GC content: 55.32

Gene sequence:

>714_bases
ATGGCAACAGACCGCGATCTCATCGGAAGTCTTGAAGCTATTGAGGCCGATCGTTTTCAGCAACTTATGGCGGATGAACG
TTTCAAGGACAATCCCCTTTTGCCGGAACTGCAACAGCTGCATGAGCTTTATCGCACCCTGTCCCAGCGTACCGAACGGA
TGATCAAGGAAAAGGCCCAGTTGCAAACCCAGCTGGTAAACATGAACCGTTCTCTGGACCTTGCAACCAGAATTGACCCG
ATGACCGGCCTTGCGAACCGGCGGGCCATCATGGAAATGATTGAACAGGAGTTCAGCAGGGCACACCGGCACCAACGGCC
AGCCTCCATCATCATGGCCGACCTTGACTACTTTAAAAAGGTTAATGACACCCATGGTTTCAACACCGGTGACGATGTTC
TGGTAGAGGTCTCCCGCGTGTTGCGCGGTTGCCTGCGCAATGAAGACATCTGTTCACGCTGGGGTGGCGAAGAATTTCTG
GTTCTGCTGCCGGAGACCCAACTTGACGGTGCCCTTGCCGTTGCCAACAAGATCCGCGAATCAGTTGCCATGACCGAATT
CAAGGTCAACCGGCCGGGGATCCAGCTTACCATCAGCCTGGGCGTCTGCGAGTACAAGCCGGACCAGAACATTTTTGAAG
CGATCTCCCGTGCTGACCAGGCCTTGTTCCAGGCCAAGCTGGGGGGCAGAAACCGCGCCATTGTGGCCGCCTGA

Upstream 100 bases:

>100_bases
ATGCAGCTCGAAGGCCTACTTTCCATTGAATTATTCAGGATTAGCGTTACAATACCATAATATTCCCATTTCACCCACAA
CTCCAAAGGGGTTCTGTACT

Downstream 100 bases:

>100_bases
GCAATCCCCCCTGCCCGCTCTAACCGGCATTATTTGGGCAGCGCCCCGTTTTTCTTCAAGACTGCAGCCAGTCCCTCCGC
AAGCTGCTGATAACCGGCAG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MATDRDLIGSLEAIEADRFQQLMADERFKDNPLLPELQQLHELYRTLSQRTERMIKEKAQLQTQLVNMNRSLDLATRIDP
MTGLANRRAIMEMIEQEFSRAHRHQRPASIIMADLDYFKKVNDTHGFNTGDDVLVEVSRVLRGCLRNEDICSRWGGEEFL
VLLPETQLDGALAVANKIRESVAMTEFKVNRPGIQLTISLGVCEYKPDQNIFEAISRADQALFQAKLGGRNRAIVAA

Sequences:

>Translated_237_residues
MATDRDLIGSLEAIEADRFQQLMADERFKDNPLLPELQQLHELYRTLSQRTERMIKEKAQLQTQLVNMNRSLDLATRIDP
MTGLANRRAIMEMIEQEFSRAHRHQRPASIIMADLDYFKKVNDTHGFNTGDDVLVEVSRVLRGCLRNEDICSRWGGEEFL
VLLPETQLDGALAVANKIRESVAMTEFKVNRPGIQLTISLGVCEYKPDQNIFEAISRADQALFQAKLGGRNRAIVAA
>Mature_236_residues
ATDRDLIGSLEAIEADRFQQLMADERFKDNPLLPELQQLHELYRTLSQRTERMIKEKAQLQTQLVNMNRSLDLATRIDPM
TGLANRRAIMEMIEQEFSRAHRHQRPASIIMADLDYFKKVNDTHGFNTGDDVLVEVSRVLRGCLRNEDICSRWGGEEFLV
LLPETQLDGALAVANKIRESVAMTEFKVNRPGIQLTISLGVCEYKPDQNIFEAISRADQALFQAKLGGRNRAIVAA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=187, Percent_Identity=40.1069518716578, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=36.8715083798883, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=36.9426751592357, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI87082007, Length=187, Percent_Identity=35.2941176470588, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787262, Length=205, Percent_Identity=32.1951219512195, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1787541, Length=167, Percent_Identity=32.3353293413174, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=33.7078651685393, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=29.6969696969697, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI87081977, Length=207, Percent_Identity=31.4009661835749, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787802, Length=171, Percent_Identity=28.6549707602339, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788085, Length=177, Percent_Identity=29.9435028248588, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=24.5161290322581, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 26972; Mature: 26841

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATDRDLIGSLEAIEADRFQQLMADERFKDNPLLPELQQLHELYRTLSQRTERMIKEKAQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LQTQLVNMNRSLDLATRIDPMTGLANRRAIMEMIEQEFSRAHRHQRPASIIMADLDYFKK
HHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
VNDTHGFNTGDDVLVEVSRVLRGCLRNEDICSRWGGEEFLVLLPETQLDGALAVANKIRE
CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH
SVAMTEFKVNRPGIQLTISLGVCEYKPDQNIFEAISRADQALFQAKLGGRNRAIVAA
HHHHHHHEECCCCEEEEEEECEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
>Mature Secondary Structure 
ATDRDLIGSLEAIEADRFQQLMADERFKDNPLLPELQQLHELYRTLSQRTERMIKEKAQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LQTQLVNMNRSLDLATRIDPMTGLANRRAIMEMIEQEFSRAHRHQRPASIIMADLDYFKK
HHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
VNDTHGFNTGDDVLVEVSRVLRGCLRNEDICSRWGGEEFLVLLPETQLDGALAVANKIRE
CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH
SVAMTEFKVNRPGIQLTISLGVCEYKPDQNIFEAISRADQALFQAKLGGRNRAIVAA
HHHHHHHEECCCCEEEEEEECEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]