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The map label for this gene is nadB [C]

Identifier: 189424009

GI number: 189424009

Start: 977704

End: 979257

Strand: Reverse

Name: nadB [C]

Synonym: Glov_0943

Alternate gene names: 189424009

Gene position: 979257-977704 (Counterclockwise)

Preceding gene: 189424011

Following gene: 189424008

Centisome position: 25.0

GC content: 57.72

Gene sequence:

>1554_bases
ATGAGTGACGAAATCAGCCAGGAATCCGAAGTAACCCGCAGAAGCTTCCTGAAAACCACCGGGGCAGTTGCAGCAGCGGC
CGGTCTGGCCATGACCGGACTGGCCGCCACAGTCCGGCAGGCAGAGGCGGCCTGTGGCGAGATGCCGAAGAAGTGGGATG
AGACCTATGACGTTATCGTTGTCGGGACCGGCTTTGCCGGTTTGTCAGCAGCCATTGAGGCCAGGCATGCCGGTGCCGAG
GTACTGGTGATTGAGAAAATGCGTACCCATGGCGGCAACTCAATCATCAACGGCGGAGAGATGGCGGTTGCAGGCACCAA
GTGGCAGAAAGAGGCCGGTATTCAGGATTCGCCTGAGCTGTTCATGAAAGACCTGCTGAAGGCCGGTTCAAACCTGAACC
ACCCTGAACTGGCCCGTACCATTGCCGAGCAGTCCGGTGAAGCGCTTGACTGGTGTCAGAACTTTGTGGGGGCCAGGTTT
GTCAAGCTGGTCTTTCATGGTGGCCACTCGGTCAAGCGGTCGGTCCAGACCGATAATGCATCCGGTTCAGGCCTGGTCAA
TCCGCTGTTTGCCAAGGCCAAATCCATGGGGGTCAAATTCCAGTTTACCACCAAGATGGAACGCCTGATCACCAACAAAG
AGGGGCGGGTTGTCGGCCTGGAGATCAGAAAGGGCTACAAATTTCCTGATGACAGGTCCGGCAAGGCAAGCTTCGTAAAG
GCCCGCAAGGCGGTGGTACTGGCATCAGGCGGCTTCTCCCAGAACGTTGAACTGCGCCAGATCCAGGACCCCCGGATTGA
CAGCCGCTTTGACTCCACCAACCATCCGGGCGCCACCGGCGAGGCCACCCTGGCCGCCTGCCGGGCAGGTGCCATGGATG
TACAGATGGACTGGATCCAGATGGGCCCTTGGACCAGTCCCGATGAAAAGGGCTTCGGACATGTCCCGCAGTTTTGTGAA
CGTCTGGTGGGCTACGGGCCGATGATTGACCCCAAAACCGGCAGGCGCTTCATTCAGGAAACCGGTAACCGCAAGGTACG
GGCCGATGCCATGATGGCACTGGGCTACCCGACCATCATCTTCGGCGATGCAGTAAACGTCAAACGGCAGGTACTGTCAC
ACACCCTGGAAAAAGGGATGGCCAACGGTGCAATCAAAAGGTTTGATACCATCGAAGAACTGGCTGCCAACTACGGCATT
CCCCTGGCTGCGCTCAAGGAAGAAATCGCCAAATGGAACTCCTATGTAGAAAAGAGAAAGGATCCTGACTTCAACTGCAA
GATCTTCCCGGAGACCACCCCGACGGTCGTAGCCCCGTTTTATGCCTGCCGGCTCTGGCCGCGGGTACATCATTGCATGG
GCGGTCTGGTGATTGACAAAAATGCCCAGGTCAAAGGCTTCAACCTCAAGCCGATCAAAGGGCTGTACGCTGCCGGCGAA
GTGACCGGCGGGGTACATGGTGCCGTGCGCCTCGGTACCTGTGCCATGCTCGATTGTGTTGTCTTCGGCAGGATCGCCGG
AAAGAACGCAGCCAAAGAAAAGAACTGGGGCTAG

Upstream 100 bases:

>100_bases
ACCCGGATGCCGGACCGGTGTGCCGGGCAACCGCCTGCAGCAGAGTCAGTTTTGTCAGATGCAGCCCGCCAGGGCCAACT
TCACGAGGGAGGTATGTCGT

Downstream 100 bases:

>100_bases
GAGCCTGTCGGACCCAGGTAAAGTTAAAGACATTAGCACGCGGATCAAATCTGATTTTGGCGGATTTACGCTGATTTTCA
GAAAACAGACGGTTTAAAAT

Product: flavocytochrome C

Products: NA

Alternate protein names: Flavocytochrome c; FL cyt [H]

Number of amino acids: Translated: 517; Mature: 516

Protein sequence:

>517_residues
MSDEISQESEVTRRSFLKTTGAVAAAAGLAMTGLAATVRQAEAACGEMPKKWDETYDVIVVGTGFAGLSAAIEARHAGAE
VLVIEKMRTHGGNSIINGGEMAVAGTKWQKEAGIQDSPELFMKDLLKAGSNLNHPELARTIAEQSGEALDWCQNFVGARF
VKLVFHGGHSVKRSVQTDNASGSGLVNPLFAKAKSMGVKFQFTTKMERLITNKEGRVVGLEIRKGYKFPDDRSGKASFVK
ARKAVVLASGGFSQNVELRQIQDPRIDSRFDSTNHPGATGEATLAACRAGAMDVQMDWIQMGPWTSPDEKGFGHVPQFCE
RLVGYGPMIDPKTGRRFIQETGNRKVRADAMMALGYPTIIFGDAVNVKRQVLSHTLEKGMANGAIKRFDTIEELAANYGI
PLAALKEEIAKWNSYVEKRKDPDFNCKIFPETTPTVVAPFYACRLWPRVHHCMGGLVIDKNAQVKGFNLKPIKGLYAAGE
VTGGVHGAVRLGTCAMLDCVVFGRIAGKNAAKEKNWG

Sequences:

>Translated_517_residues
MSDEISQESEVTRRSFLKTTGAVAAAAGLAMTGLAATVRQAEAACGEMPKKWDETYDVIVVGTGFAGLSAAIEARHAGAE
VLVIEKMRTHGGNSIINGGEMAVAGTKWQKEAGIQDSPELFMKDLLKAGSNLNHPELARTIAEQSGEALDWCQNFVGARF
VKLVFHGGHSVKRSVQTDNASGSGLVNPLFAKAKSMGVKFQFTTKMERLITNKEGRVVGLEIRKGYKFPDDRSGKASFVK
ARKAVVLASGGFSQNVELRQIQDPRIDSRFDSTNHPGATGEATLAACRAGAMDVQMDWIQMGPWTSPDEKGFGHVPQFCE
RLVGYGPMIDPKTGRRFIQETGNRKVRADAMMALGYPTIIFGDAVNVKRQVLSHTLEKGMANGAIKRFDTIEELAANYGI
PLAALKEEIAKWNSYVEKRKDPDFNCKIFPETTPTVVAPFYACRLWPRVHHCMGGLVIDKNAQVKGFNLKPIKGLYAAGE
VTGGVHGAVRLGTCAMLDCVVFGRIAGKNAAKEKNWG
>Mature_516_residues
SDEISQESEVTRRSFLKTTGAVAAAAGLAMTGLAATVRQAEAACGEMPKKWDETYDVIVVGTGFAGLSAAIEARHAGAEV
LVIEKMRTHGGNSIINGGEMAVAGTKWQKEAGIQDSPELFMKDLLKAGSNLNHPELARTIAEQSGEALDWCQNFVGARFV
KLVFHGGHSVKRSVQTDNASGSGLVNPLFAKAKSMGVKFQFTTKMERLITNKEGRVVGLEIRKGYKFPDDRSGKASFVKA
RKAVVLASGGFSQNVELRQIQDPRIDSRFDSTNHPGATGEATLAACRAGAMDVQMDWIQMGPWTSPDEKGFGHVPQFCER
LVGYGPMIDPKTGRRFIQETGNRKVRADAMMALGYPTIIFGDAVNVKRQVLSHTLEKGMANGAIKRFDTIEELAANYGIP
LAALKEEIAKWNSYVEKRKDPDFNCKIFPETTPTVVAPFYACRLWPRVHHCMGGLVIDKNAQVKGFNLKPIKGLYAAGEV
TGGVHGAVRLGTCAMLDCVVFGRIAGKNAAKEKNWG

Specific function: Catalyzes fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown, but evidence indicates that flavocytochrome c participates in electron transfer from formate to fumarate and possibly also to tr

COG id: COG1053

COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI71986328, Length=476, Percent_Identity=30.2521008403361, Blast_Score=176, Evalue=3e-44,
Organism=Saccharomyces cerevisiae, GI6320788, Length=482, Percent_Identity=31.9502074688797, Blast_Score=184, Evalue=2e-47,
Organism=Saccharomyces cerevisiae, GI6322511, Length=484, Percent_Identity=27.8925619834711, Blast_Score=152, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003953
- InterPro:   IPR013027
- InterPro:   IPR010960
- InterPro:   IPR011031
- InterPro:   IPR012286 [H]

Pfam domain/function: PF00890 FAD_binding_2 [H]

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 56028; Mature: 55897

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDEISQESEVTRRSFLKTTGAVAAAAGLAMTGLAATVRQAEAACGEMPKKWDETYDVIV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEE
VGTGFAGLSAAIEARHAGAEVLVIEKMRTHGGNSIINGGEMAVAGTKWQKEAGIQDSPEL
EECCCHHHHHHHHHHHCCCEEEEEEEHHHCCCCCEECCCCEEEECCCHHHHCCCCCCHHH
FMKDLLKAGSNLNHPELARTIAEQSGEALDWCQNFVGARFVKLVFHGGHSVKRSVQTDNA
HHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
SGSGLVNPLFAKAKSMGVKFQFTTKMERLITNKEGRVVGLEIRKGYKFPDDRSGKASFVK
CCCCCCHHHHHHHHHCCEEEEEHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHH
ARKAVVLASGGFSQNVELRQIQDPRIDSRFDSTNHPGATGEATLAACRAGAMDVQMDWIQ
HCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEE
MGPWTSPDEKGFGHVPQFCERLVGYGPMIDPKTGRRFIQETGNRKVRADAMMALGYPTII
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCEEE
FGDAVNVKRQVLSHTLEKGMANGAIKRFDTIEELAANYGIPLAALKEEIAKWNSYVEKRK
ECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
DPDFNCKIFPETTPTVVAPFYACRLWPRVHHCMGGLVIDKNAQVKGFNLKPIKGLYAAGE
CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCEEECCCCCCCHHHHCCCC
VTGGVHGAVRLGTCAMLDCVVFGRIAGKNAAKEKNWG
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SDEISQESEVTRRSFLKTTGAVAAAAGLAMTGLAATVRQAEAACGEMPKKWDETYDVIV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEE
VGTGFAGLSAAIEARHAGAEVLVIEKMRTHGGNSIINGGEMAVAGTKWQKEAGIQDSPEL
EECCCHHHHHHHHHHHCCCEEEEEEEHHHCCCCCEECCCCEEEECCCHHHHCCCCCCHHH
FMKDLLKAGSNLNHPELARTIAEQSGEALDWCQNFVGARFVKLVFHGGHSVKRSVQTDNA
HHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
SGSGLVNPLFAKAKSMGVKFQFTTKMERLITNKEGRVVGLEIRKGYKFPDDRSGKASFVK
CCCCCCHHHHHHHHHCCEEEEEHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHH
ARKAVVLASGGFSQNVELRQIQDPRIDSRFDSTNHPGATGEATLAACRAGAMDVQMDWIQ
HCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEE
MGPWTSPDEKGFGHVPQFCERLVGYGPMIDPKTGRRFIQETGNRKVRADAMMALGYPTII
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCEEE
FGDAVNVKRQVLSHTLEKGMANGAIKRFDTIEELAANYGIPLAALKEEIAKWNSYVEKRK
ECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
DPDFNCKIFPETTPTVVAPFYACRLWPRVHHCMGGLVIDKNAQVKGFNLKPIKGLYAAGE
CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCEEECCCCCCCHHHHCCCC
VTGGVHGAVRLGTCAMLDCVVFGRIAGKNAAKEKNWG
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11425747; 12368813; 10581551 [H]