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The map label for this gene is cph2 [H]

Identifier: 189423872

GI number: 189423872

Start: 824568

End: 825608

Strand: Reverse

Name: cph2 [H]

Synonym: Glov_0803

Alternate gene names: 189423872

Gene position: 825608-824568 (Counterclockwise)

Preceding gene: 189423873

Following gene: 189423824

Centisome position: 21.07

GC content: 55.04

Gene sequence:

>1041_bases
ATGACCTGGTTTATCTTCAGCGGAGGGCTGCTTGTTGGACTGATGCTGCACCCCTTCGCACGGATGCTGAAGTCTGACGG
CATCAATTACGTGCTGGACCTGATCGGACAGATTGTTACCGCACCGTTCAGCGCCATTGTCGACTATTTCCAGAAAAGAT
CAGATCTTGCCAAGGCCCGGCGGGGGGTGGAGACACCGTCGGCCGGGCAGGTTGACCCGCGCGAACAGCAAATCAGCGAT
TCGGCTCAGACCATCCGCAGTATCCTGCTTTCACTGGCATCAGTGATCAATCGGACGGATCAGGCTGCCAGCGACTCCTC
CCACGCCTTAAACGAGGTCCGGGCAACAATAGATCAGACCGGCCTGCCCAGTGACCTGGCTGCTGCCCATGCGTTGCTGA
TTGCCGAAATTGACCGGGTGATAGCCAGCAACAGCGAGCTTAAGGGAGAACTTGCCAGTTCTCAGGCAATACTTGCGACC
CAGCGTGAACAGATTGAGACCTTGAAGACCGCCGTGCGGATTGACGGCCTGACCCAACTGGCCAACCGGGCCTACTTTGA
TGAAAAACTGCTGGAAATGATCCTGCTGCACCAGCGTTACAACGAGCCGTTCTCGCTGATGATGATTGATGTTGATTACT
TCAAGAACATCAACGACAGCCATGGCCACCAGGCTGGCGACCGGATCTTGAAGGGGGTTGCATTCAAGATCAAGGCCTCC
CTGCGGGAGAGCGATTTTCTGGCCCGTTTTGGCGGGGACGAATTCGCTTTGATACTGATCAAGGCCAGCCTGCAGCCGGC
AACGGTACTTGCTGAAAAAATCTGCACCAATATCCGTGAAAGCCGTTTCATCCTGGATGGGACCGAGTTCAAGGTAACCC
TCTCCATCGGCGTAGCTGAAGTCCATGCCGATGACACACCGGAAAGTCTTTTGCAGCGGGCAGACAGGGCGCTCTATCTG
GTAAAGGAGCGGGGACGTAATGGTGTAGAATCAAAGATGCATGTAGAAAGTAGCGAAGCACTCAGCCAAGTAGACGCCTG
A

Upstream 100 bases:

>100_bases
CGTCTCAAGGCCGAGGAGTCATTACACCTGCAGCGCCTTGAGGATCTCTACGAGCAGCACTTCATGACTGAAAATTGAGT
ATCCTCCGGGAGAGCAGACG

Downstream 100 bases:

>100_bases
TCGCGGCACTGGCCATAAACAGCCCGAAGGCAGCAGGCAGGTAGGAGATCGTGCCTAACGGACGACGTTCTCCTTCCGTC
TCCGGCTCCCCCAGACATTC

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MTWFIFSGGLLVGLMLHPFARMLKSDGINYVLDLIGQIVTAPFSAIVDYFQKRSDLAKARRGVETPSAGQVDPREQQISD
SAQTIRSILLSLASVINRTDQAASDSSHALNEVRATIDQTGLPSDLAAAHALLIAEIDRVIASNSELKGELASSQAILAT
QREQIETLKTAVRIDGLTQLANRAYFDEKLLEMILLHQRYNEPFSLMMIDVDYFKNINDSHGHQAGDRILKGVAFKIKAS
LRESDFLARFGGDEFALILIKASLQPATVLAEKICTNIRESRFILDGTEFKVTLSIGVAEVHADDTPESLLQRADRALYL
VKERGRNGVESKMHVESSEALSQVDA

Sequences:

>Translated_346_residues
MTWFIFSGGLLVGLMLHPFARMLKSDGINYVLDLIGQIVTAPFSAIVDYFQKRSDLAKARRGVETPSAGQVDPREQQISD
SAQTIRSILLSLASVINRTDQAASDSSHALNEVRATIDQTGLPSDLAAAHALLIAEIDRVIASNSELKGELASSQAILAT
QREQIETLKTAVRIDGLTQLANRAYFDEKLLEMILLHQRYNEPFSLMMIDVDYFKNINDSHGHQAGDRILKGVAFKIKAS
LRESDFLARFGGDEFALILIKASLQPATVLAEKICTNIRESRFILDGTEFKVTLSIGVAEVHADDTPESLLQRADRALYL
VKERGRNGVESKMHVESSEALSQVDA
>Mature_345_residues
TWFIFSGGLLVGLMLHPFARMLKSDGINYVLDLIGQIVTAPFSAIVDYFQKRSDLAKARRGVETPSAGQVDPREQQISDS
AQTIRSILLSLASVINRTDQAASDSSHALNEVRATIDQTGLPSDLAAAHALLIAEIDRVIASNSELKGELASSQAILATQ
REQIETLKTAVRIDGLTQLANRAYFDEKLLEMILLHQRYNEPFSLMMIDVDYFKNINDSHGHQAGDRILKGVAFKIKASL
RESDFLARFGGDEFALILIKASLQPATVLAEKICTNIRESRFILDGTEFKVTLSIGVAEVHADDTPESLLQRADRALYLV
KERGRNGVESKMHVESSEALSQVDA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=43.0379746835443, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI145693134, Length=176, Percent_Identity=38.0681818181818, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=37.4269005847953, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788381, Length=175, Percent_Identity=37.1428571428571, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=34.8837209302326, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=31.0344827586207, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787802, Length=158, Percent_Identity=32.9113924050633, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=30.1204819277108, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787541, Length=178, Percent_Identity=30.8988764044944, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081974, Length=149, Percent_Identity=32.2147651006711, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788956, Length=197, Percent_Identity=32.994923857868, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=33.5329341317365, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081977, Length=170, Percent_Identity=30.5882352941176, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=169, Percent_Identity=31.9526627218935, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 38113; Mature: 37982

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWFIFSGGLLVGLMLHPFARMLKSDGINYVLDLIGQIVTAPFSAIVDYFQKRSDLAKAR
CEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGVETPSAGQVDPREQQISDSAQTIRSILLSLASVINRTDQAASDSSHALNEVRATIDQT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
GLPSDLAAAHALLIAEIDRVIASNSELKGELASSQAILATQREQIETLKTAVRIDGLTQL
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ANRAYFDEKLLEMILLHQRYNEPFSLMMIDVDYFKNINDSHGHQAGDRILKGVAFKIKAS
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LRESDFLARFGGDEFALILIKASLQPATVLAEKICTNIRESRFILDGTEFKVTLSIGVAE
HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCEEEECCEEEEEEEECEEE
VHADDTPESLLQRADRALYLVKERGRNGVESKMHVESSEALSQVDA
ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHCCC
>Mature Secondary Structure 
TWFIFSGGLLVGLMLHPFARMLKSDGINYVLDLIGQIVTAPFSAIVDYFQKRSDLAKAR
EEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGVETPSAGQVDPREQQISDSAQTIRSILLSLASVINRTDQAASDSSHALNEVRATIDQT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
GLPSDLAAAHALLIAEIDRVIASNSELKGELASSQAILATQREQIETLKTAVRIDGLTQL
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ANRAYFDEKLLEMILLHQRYNEPFSLMMIDVDYFKNINDSHGHQAGDRILKGVAFKIKAS
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LRESDFLARFGGDEFALILIKASLQPATVLAEKICTNIRESRFILDGTEFKVTLSIGVAE
HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCEEEECCEEEEEEEECEEE
VHADDTPESLLQRADRALYLVKERGRNGVESKMHVESSEALSQVDA
ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]