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The map label for this gene is ycfS [H]

Identifier: 189423824

GI number: 189423824

Start: 767020

End: 768366

Strand: Reverse

Name: ycfS [H]

Synonym: Glov_0755

Alternate gene names: 189423824

Gene position: 768366-767020 (Counterclockwise)

Preceding gene: 189423872

Following gene: 189423822

Centisome position: 19.61

GC content: 56.5

Gene sequence:

>1347_bases
ATGAACTATTCTTTCTTAGCATTCTGCGCCCTGTTTTGCAGTCTGGTAAGCGCCAGCAGTGCGCTGGCGGATCCACGCAG
CGATGCCATGGCAGTGTTGGCCAAACTCCGGCAAGAGGGTATTGCGAACCGGCTGCCTGACGAAATGCGCAGCCTTGATG
CGGCTCTGGCAACGGCGGAGATGTACTACCAATTGAATGACCAGAAGAATGCTGAGCGCTACTATCAGCTTGCCATCCAG
AAGGGGGCTGTAATTCAGCAACGCCTGCTGGCAACCACATCTGCACCAGAGACAGTCGACATCCCCCAGGACGGCCCCGC
CAACAGCGTTCCTCCCGCCAAGGCCCAAACCAGCCCTCCGTTACCTACGCAAACCATCCAAAAACCTGTCTCAAGCGCCG
CCATACCGGTTACCCCTGCCCAGCAACAAACTTCGGTGCAGCCCGAAGCTGAAGAGCCTCCCCCATTCAGTTCAACCAGA
CTTGTCGGTACTGCCGGCATCTACACCGTGGCAAAGGGGGACACCCTGCGGCTGGTTGCAGCAAAGTTGGGGGTCAGCCG
GACACAGCTTGCAGCCATGAATGGATTAAGTCACAAGGATGCTCTAAAGGCCGGACAACTTCTGCGCTACAATAATCAAC
GGATCATCCCGCCACACCGGACCCGCGACGGCATCGTCATCAATATACCGGATCGCATGCTCTACCTCTTCCAGCAGGGT
AGCATGGCCTTCTCCACCGCAGTTGCCTTGGGCACACCGACTAAAACTGATCAGTTCGTATGGGAAACTCCGGTCGGCAA
GTTCAAGATCGTCAACAAGGCCAAAGACCCTACCTGGACAGTGCCCCCCTCCATTCAGGAAGAGATGCGTCTGGAGGGCA
AGGAAGTGATCACCAGCATCCCGCCCGGCAAGGACAACCCGCTCGGCAAGTATGCCATGAAGACCTCACTGCCGGGCATC
CTGATCCACAGCACCACCAAGCCCTGGTCAATCTACACCTACGCCAGCCATGGCTGTATCAGAGTGTATCCGGAACGGAT
GGAGGAGTTGTTCAAGCTGGTAAAACCCAATACGGCAGGCGAGATCATTTACAAACCGGTCAAGCTGGCGGTAACCGAGG
ACGGCCGTGTACTGCTCGAAGCCCACGTCGATATTTACAAAAAGACCAAAGGCCTGGCAGCCGAGGCCCAGGCGCTGATC
CGCGCCCAGAAACTTGATTCGAGGGTTGACTGGGAAAAAGTAAAACGGGTGATCTCCCGCAAGGCCGGTGTAGCCGAAGA
GATCACCCGTAATGTTCCTGAGACACAGCAGACCGTTGACGCAAGCCGCTCTCAATCCCCTTCATAA

Upstream 100 bases:

>100_bases
CCCTAACTACCTGAAATCTGTTTGCGAGAATACGACTACTGGTGTATAGCACGAATCGCTTTCAACAAATTCTGCTCATG
TTTATATAAGGACCGGCATC

Downstream 100 bases:

>100_bases
ACGGAAGGTTCAGTACCCCGGATAAATGCCTCTGACGCTCCATCAACACCCCGTGAGAGTTTACCGCTTTTCGGGTTAAC
CCGCACCACAGAGACGGTTT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MNYSFLAFCALFCSLVSASSALADPRSDAMAVLAKLRQEGIANRLPDEMRSLDAALATAEMYYQLNDQKNAERYYQLAIQ
KGAVIQQRLLATTSAPETVDIPQDGPANSVPPAKAQTSPPLPTQTIQKPVSSAAIPVTPAQQQTSVQPEAEEPPPFSSTR
LVGTAGIYTVAKGDTLRLVAAKLGVSRTQLAAMNGLSHKDALKAGQLLRYNNQRIIPPHRTRDGIVINIPDRMLYLFQQG
SMAFSTAVALGTPTKTDQFVWETPVGKFKIVNKAKDPTWTVPPSIQEEMRLEGKEVITSIPPGKDNPLGKYAMKTSLPGI
LIHSTTKPWSIYTYASHGCIRVYPERMEELFKLVKPNTAGEIIYKPVKLAVTEDGRVLLEAHVDIYKKTKGLAAEAQALI
RAQKLDSRVDWEKVKRVISRKAGVAEEITRNVPETQQTVDASRSQSPS

Sequences:

>Translated_448_residues
MNYSFLAFCALFCSLVSASSALADPRSDAMAVLAKLRQEGIANRLPDEMRSLDAALATAEMYYQLNDQKNAERYYQLAIQ
KGAVIQQRLLATTSAPETVDIPQDGPANSVPPAKAQTSPPLPTQTIQKPVSSAAIPVTPAQQQTSVQPEAEEPPPFSSTR
LVGTAGIYTVAKGDTLRLVAAKLGVSRTQLAAMNGLSHKDALKAGQLLRYNNQRIIPPHRTRDGIVINIPDRMLYLFQQG
SMAFSTAVALGTPTKTDQFVWETPVGKFKIVNKAKDPTWTVPPSIQEEMRLEGKEVITSIPPGKDNPLGKYAMKTSLPGI
LIHSTTKPWSIYTYASHGCIRVYPERMEELFKLVKPNTAGEIIYKPVKLAVTEDGRVLLEAHVDIYKKTKGLAAEAQALI
RAQKLDSRVDWEKVKRVISRKAGVAEEITRNVPETQQTVDASRSQSPS
>Mature_448_residues
MNYSFLAFCALFCSLVSASSALADPRSDAMAVLAKLRQEGIANRLPDEMRSLDAALATAEMYYQLNDQKNAERYYQLAIQ
KGAVIQQRLLATTSAPETVDIPQDGPANSVPPAKAQTSPPLPTQTIQKPVSSAAIPVTPAQQQTSVQPEAEEPPPFSSTR
LVGTAGIYTVAKGDTLRLVAAKLGVSRTQLAAMNGLSHKDALKAGQLLRYNNQRIIPPHRTRDGIVINIPDRMLYLFQQG
SMAFSTAVALGTPTKTDQFVWETPVGKFKIVNKAKDPTWTVPPSIQEEMRLEGKEVITSIPPGKDNPLGKYAMKTSLPGI
LIHSTTKPWSIYTYASHGCIRVYPERMEELFKLVKPNTAGEIIYKPVKLAVTEDGRVLLEAHVDIYKKTKGLAAEAQALI
RAQKLDSRVDWEKVKRVISRKAGVAEEITRNVPETQQTVDASRSQSPS

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=288, Percent_Identity=27.4305555555556, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1787968, Length=291, Percent_Identity=28.5223367697594, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1787040, Length=235, Percent_Identity=31.4893617021277, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1788299, Length=288, Percent_Identity=28.125, Blast_Score=90, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 49061; Mature: 49061

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYSFLAFCALFCSLVSASSALADPRSDAMAVLAKLRQEGIANRLPDEMRSLDAALATAE
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
MYYQLNDQKNAERYYQLAIQKGAVIQQRLLATTSAPETVDIPQDGPANSVPPAKAQTSPP
HHEEECCCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCC
LPTQTIQKPVSSAAIPVTPAQQQTSVQPEAEEPPPFSSTRLVGTAGIYTVAKGDTLRLVA
CCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEECCCEEEEECCCEEEEHH
AKLGVSRTQLAAMNGLSHKDALKAGQLLRYNNQRIIPPHRTRDGIVINIPDRMLYLFQQG
HHHCCCHHHHHHHCCCCHHHHHHHHHHHEECCCEECCCCCCCCCEEEECCHHHEEHHHCC
SMAFSTAVALGTPTKTDQFVWETPVGKFKIVNKAKDPTWTVPPSIQEEMRLEGKEVITSI
CHHHHHEEEECCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHCC
PPGKDNPLGKYAMKTSLPGILIHSTTKPWSIYTYASHGCIRVYPERMEELFKLVKPNTAG
CCCCCCCCCHHHHHHCCCEEEEECCCCCEEEEEECCCCEEEECHHHHHHHHHHHCCCCCC
EIIYKPVKLAVTEDGRVLLEAHVDIYKKTKGLAAEAQALIRAQKLDSRVDWEKVKRVISR
CEEEECEEEEEECCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
KAGVAEEITRNVPETQQTVDASRSQSPS
HCCCHHHHHCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNYSFLAFCALFCSLVSASSALADPRSDAMAVLAKLRQEGIANRLPDEMRSLDAALATAE
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
MYYQLNDQKNAERYYQLAIQKGAVIQQRLLATTSAPETVDIPQDGPANSVPPAKAQTSPP
HHEEECCCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCC
LPTQTIQKPVSSAAIPVTPAQQQTSVQPEAEEPPPFSSTRLVGTAGIYTVAKGDTLRLVA
CCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEECCCEEEEECCCEEEEHH
AKLGVSRTQLAAMNGLSHKDALKAGQLLRYNNQRIIPPHRTRDGIVINIPDRMLYLFQQG
HHHCCCHHHHHHHCCCCHHHHHHHHHHHEECCCEECCCCCCCCCEEEECCHHHEEHHHCC
SMAFSTAVALGTPTKTDQFVWETPVGKFKIVNKAKDPTWTVPPSIQEEMRLEGKEVITSI
CHHHHHEEEECCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHCC
PPGKDNPLGKYAMKTSLPGILIHSTTKPWSIYTYASHGCIRVYPERMEELFKLVKPNTAG
CCCCCCCCCHHHHHHCCCEEEEECCCCCEEEEEECCCCEEEECHHHHHHHHHHHCCCCCC
EIIYKPVKLAVTEDGRVLLEAHVDIYKKTKGLAAEAQALIRAQKLDSRVDWEKVKRVISR
CEEEECEEEEEECCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
KAGVAEEITRNVPETQQTVDASRSQSPS
HCCCHHHHHCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]