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The map label for this gene is ccsA [H]

Identifier: 189423575

GI number: 189423575

Start: 479901

End: 480716

Strand: Reverse

Name: ccsA [H]

Synonym: Glov_0504

Alternate gene names: 189423575

Gene position: 480716-479901 (Counterclockwise)

Preceding gene: 189423578

Following gene: 189423574

Centisome position: 12.27

GC content: 58.21

Gene sequence:

>816_bases
ATGACCCAGATATCCTTTTACCTGACCCTCTCGCTCTATGCAGTTGCCACACTGCTTTACCTGAGCTGCCTGTTACGCAA
CTCCTCCTGCCAGTCCATTCTGGGCAGCAGGGTGCTGCTGGCCGGTTTTCTGGCCCACTGCCTGGCCACTATCCATCGCT
TCATCGCTGCCGGGCACCTGCCGATCACCAACATGCACGAATCACTCTCCTTCTTTGCACTCACAATCGCAGGGGTCTAC
CTCTTCTTTGAGCAGCGCTACAAGGTCAGGATCCTGGGTTCGTTTGTGGTGCCATTCACCCTGTTGCTGACCCTTGGCGC
CGGCATCGCGCCAACCGCAATCAAGCCGCTGAATCCGGCCCTGCAATCGCTCTGGATCTATTCGCACACCATCCTGGCCT
TTGGTGCCTACGCCTTCTTTACTATCTCCGGCGGCGTAGCCCTGCTGTATCTGATTCAATCCCATTTCCTGAAAAAGAAG
CACCTGGGGCCGCTCTTCCTGAAGCTGCCATCTTTGGATGTACTGGACGAGATCGGTTACCGCTGTCTTGCCTTCGGCTT
CCCGATGCTGACGGTTGCCATCATCACCGGTGCCATCTGGGCCTCCCGGGCCTGGGGCAGCTACTGGTCCTGGGACCCTA
AAGAGAGCTGGTCGCTGATCACTTGGTTTATCTATGCAGCCCTGCTGCACGGACGGCTTACCACCGGCTGGCGCGGCAGG
CGGGCCGCCATCCTGACCGTCATCGGCTTTCTGGTCATGCTCTTTACCTTCCTCGGGGTAAACCTCTGGCTCCCCGGCCT
GCATAGCTACACCTAA

Upstream 100 bases:

>100_bases
ACGGTGGGAATAGCAGACCCGTACAATACACCCTTGCCGATCACTATGCAGGTTTATTTTTTATCCTGAACACTGGCCTC
TGGCCCCTGGACCCTATCCA

Downstream 100 bases:

>100_bases
GGGACGGCCGTATGAACATCATCGTTGTCGGCCTGTCCCACAAGACAGCGTCGGTTGATATCAGAGAGAAGGTCGCCTTC
TCACCCAACAGCATCGAAAA

Product: cytochrome C biogenesis protein CcsB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MTQISFYLTLSLYAVATLLYLSCLLRNSSCQSILGSRVLLAGFLAHCLATIHRFIAAGHLPITNMHESLSFFALTIAGVY
LFFEQRYKVRILGSFVVPFTLLLTLGAGIAPTAIKPLNPALQSLWIYSHTILAFGAYAFFTISGGVALLYLIQSHFLKKK
HLGPLFLKLPSLDVLDEIGYRCLAFGFPMLTVAIITGAIWASRAWGSYWSWDPKESWSLITWFIYAALLHGRLTTGWRGR
RAAILTVIGFLVMLFTFLGVNLWLPGLHSYT

Sequences:

>Translated_271_residues
MTQISFYLTLSLYAVATLLYLSCLLRNSSCQSILGSRVLLAGFLAHCLATIHRFIAAGHLPITNMHESLSFFALTIAGVY
LFFEQRYKVRILGSFVVPFTLLLTLGAGIAPTAIKPLNPALQSLWIYSHTILAFGAYAFFTISGGVALLYLIQSHFLKKK
HLGPLFLKLPSLDVLDEIGYRCLAFGFPMLTVAIITGAIWASRAWGSYWSWDPKESWSLITWFIYAALLHGRLTTGWRGR
RAAILTVIGFLVMLFTFLGVNLWLPGLHSYT
>Mature_270_residues
TQISFYLTLSLYAVATLLYLSCLLRNSSCQSILGSRVLLAGFLAHCLATIHRFIAAGHLPITNMHESLSFFALTIAGVYL
FFEQRYKVRILGSFVVPFTLLLTLGAGIAPTAIKPLNPALQSLWIYSHTILAFGAYAFFTISGGVALLYLIQSHFLKKKH
LGPLFLKLPSLDVLDEIGYRCLAFGFPMLTVAIITGAIWASRAWGSYWSWDPKESWSLITWFIYAALLHGRLTTGWRGRR
AAILTVIGFLVMLFTFLGVNLWLPGLHSYT

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30219; Mature: 30088

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQISFYLTLSLYAVATLLYLSCLLRNSSCQSILGSRVLLAGFLAHCLATIHRFIAAGHL
CCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PITNMHESLSFFALTIAGVYLFFEQRYKVRILGSFVVPFTLLLTLGAGIAPTAIKPLNPA
CCHHHHHHHHHHHHHHHHHHHHHHHCHHEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
LQSLWIYSHTILAFGAYAFFTISGGVALLYLIQSHFLKKKHLGPLFLKLPSLDVLDEIGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHH
RCLAFGFPMLTVAIITGAIWASRAWGSYWSWDPKESWSLITWFIYAALLHGRLTTGWRGR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCH
RAAILTVIGFLVMLFTFLGVNLWLPGLHSYT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TQISFYLTLSLYAVATLLYLSCLLRNSSCQSILGSRVLLAGFLAHCLATIHRFIAAGHL
CEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PITNMHESLSFFALTIAGVYLFFEQRYKVRILGSFVVPFTLLLTLGAGIAPTAIKPLNPA
CCHHHHHHHHHHHHHHHHHHHHHHHCHHEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
LQSLWIYSHTILAFGAYAFFTISGGVALLYLIQSHFLKKKHLGPLFLKLPSLDVLDEIGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHH
RCLAFGFPMLTVAIITGAIWASRAWGSYWSWDPKESWSLITWFIYAALLHGRLTTGWRGR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCH
RAAILTVIGFLVMLFTFLGVNLWLPGLHSYT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA