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The map label for this gene is rbpE [H]

Identifier: 189423423

GI number: 189423423

Start: 322970

End: 323299

Strand: Reverse

Name: rbpE [H]

Synonym: Glov_0352

Alternate gene names: 189423423

Gene position: 323299-322970 (Counterclockwise)

Preceding gene: 189423424

Following gene: 189423422

Centisome position: 8.25

GC content: 58.18

Gene sequence:

>330_bases
ATGGCCAAAGAACTCTATGTAGGGCACCTGCCCTATGAAGCAACAGCAGATGACCTGCGCAGGATGTTCAGCGTGGCAGG
CACCGTTACCTCGGTGCATATCATCACCGATCCTGCAACCGGCAAGTCAAAAGGCTGCGGTTATGTACGGATGGCAGATG
AAGCGCAGCTGCACGAGGCAATTGAGTGTCTGGATGGCGCCTTGATGGAAAACCGGGTCATTACGGTCAGCATTGCCAAC
CCCCAAAAAGCACAGACAAAGCCGCTCACCCGTGGTGCCGGCAATACCCAGCCGGGATCGCGGCGGGCGCGGGCACGCCA
GAAGCAGTAG

Upstream 100 bases:

>100_bases
GAATTCGGCGACGCAGGCGTACACGTCAGTACGTTGAGGAGCCGAAGACGAGCCCACAAGGCCAGGGCCTTGAAATGGAA
GCGGGACAAAGGACCAGCTC

Downstream 100 bases:

>100_bases
CCGCAGACGGTCACGCACTCAGGGAGGTCAGGGACATGGAACAGCTTGGGCATTTTCTTGCGACGGTCAAAGAGACCGTC
AATCCGGTCACACAACCGGT

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MAKELYVGHLPYEATADDLRRMFSVAGTVTSVHIITDPATGKSKGCGYVRMADEAQLHEAIECLDGALMENRVITVSIAN
PQKAQTKPLTRGAGNTQPGSRRARARQKQ

Sequences:

>Translated_109_residues
MAKELYVGHLPYEATADDLRRMFSVAGTVTSVHIITDPATGKSKGCGYVRMADEAQLHEAIECLDGALMENRVITVSIAN
PQKAQTKPLTRGAGNTQPGSRRARARQKQ
>Mature_108_residues
AKELYVGHLPYEATADDLRRMFSVAGTVTSVHIITDPATGKSKGCGYVRMADEAQLHEAIECLDGALMENRVITVSIANP
QKAQTKPLTRGAGNTQPGSRRARARQKQ

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 11825; Mature: 11693

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKELYVGHLPYEATADDLRRMFSVAGTVTSVHIITDPATGKSKGCGYVRMADEAQLHEA
CCCCEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHH
IECLDGALMENRVITVSIANPQKAQTKPLTRGAGNTQPGSRRARARQKQ
HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC
>Mature Secondary Structure 
AKELYVGHLPYEATADDLRRMFSVAGTVTSVHIITDPATGKSKGCGYVRMADEAQLHEA
CCCEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHH
IECLDGALMENRVITVSIANPQKAQTKPLTRGAGNTQPGSRRARARQKQ
HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]