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The map label for this gene is ylmD [H]

Identifier: 189423409

GI number: 189423409

Start: 309880

End: 310683

Strand: Reverse

Name: ylmD [H]

Synonym: Glov_0338

Alternate gene names: 189423409

Gene position: 310683-309880 (Counterclockwise)

Preceding gene: 189423410

Following gene: 189423408

Centisome position: 7.93

GC content: 59.08

Gene sequence:

>804_bases
ATGGAAACAACCCGCATCGGACGCATTCACTATCTTGCGCCCAGCTTTGAAACGACAGCACCGGCAACGATTCAGGGCTT
CACAACCCGCCACGAAGGGATCTCACGTCCTCCCTACAACTCACTGAATCTGGGCATGAACACCGATGACTCGCCCCACA
ACGTGGAGGGCAACCGCAGCCTGCTGGCCCGGGCCTTTGGCATCCCACAGGAACGCCTGGTCACGGTGCGCCAAAACCAT
GGCACCGACATCCTGGTTATTGACGCGCCCAACGATGATTTTTCGCACTTTACCGCCCTTGAGGCTGACGCCATCATCAC
CAACCAGCCCGGCGTAATGATCGGGGTCACCGTGGCAGACTGCGTGCCGCTCCTGTTGTTTGATCCGGCCAAGAAGGTGA
TTGCCGCGGTCCATGCCGGCTGGCAGGGCACAGCGGCCCGGATTGCCGCCCAGGCCGCTGAAGGAATGAAACAGGTGTTC
GGCAGCCGCCCCAGAGATATACAGGCTGCAATCGGTCCCTGTATCAACCCCTGTTGCTATGAAGTGGACCAACCGGTCAA
GGATGGGTTCAAGAATCAAGCTGAGCTCTGGAACGCTGTGGCAGAACCTGCCGGCAATGGCAAATGGCGGCTTGACCTGG
CCCTGGCAAACCGGATGCAGCTGGAGGATGCAGGGCTTGTTCCCGGCTCCATCCAGACCTCCGGTAACTGTGTCTGCTGC
CAAAAAGAGCTGTTCTTTTCCTACCGGCGGGATGACGGTGAGACAGGACGGCAGATGGGCTTCATCATGCTGAAGGAAGC
CTGA

Upstream 100 bases:

>100_bases
TCATTCTGGCAAGCTGTGGACTGGTGGCAGGCTATATCTGGTGGCAGCGCCGCCGGCAGACATTAAACCGTAATAAGCCT
TGAAAGGCAAAGGAATTCAA

Downstream 100 bases:

>100_bases
AATGCTGGCCAAGGTCCTGAGTGCCACCGTTGTCGGAATTGACGCCATTCTGGTCGATGTAGAGGTGGATATTGCCCAGG
GTCTGCCGCAGTTTTCCACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
METTRIGRIHYLAPSFETTAPATIQGFTTRHEGISRPPYNSLNLGMNTDDSPHNVEGNRSLLARAFGIPQERLVTVRQNH
GTDILVIDAPNDDFSHFTALEADAIITNQPGVMIGVTVADCVPLLLFDPAKKVIAAVHAGWQGTAARIAAQAAEGMKQVF
GSRPRDIQAAIGPCINPCCYEVDQPVKDGFKNQAELWNAVAEPAGNGKWRLDLALANRMQLEDAGLVPGSIQTSGNCVCC
QKELFFSYRRDDGETGRQMGFIMLKEA

Sequences:

>Translated_267_residues
METTRIGRIHYLAPSFETTAPATIQGFTTRHEGISRPPYNSLNLGMNTDDSPHNVEGNRSLLARAFGIPQERLVTVRQNH
GTDILVIDAPNDDFSHFTALEADAIITNQPGVMIGVTVADCVPLLLFDPAKKVIAAVHAGWQGTAARIAAQAAEGMKQVF
GSRPRDIQAAIGPCINPCCYEVDQPVKDGFKNQAELWNAVAEPAGNGKWRLDLALANRMQLEDAGLVPGSIQTSGNCVCC
QKELFFSYRRDDGETGRQMGFIMLKEA
>Mature_267_residues
METTRIGRIHYLAPSFETTAPATIQGFTTRHEGISRPPYNSLNLGMNTDDSPHNVEGNRSLLARAFGIPQERLVTVRQNH
GTDILVIDAPNDDFSHFTALEADAIITNQPGVMIGVTVADCVPLLLFDPAKKVIAAVHAGWQGTAARIAAQAAEGMKQVF
GSRPRDIQAAIGPCINPCCYEVDQPVKDGFKNQAELWNAVAEPAGNGKWRLDLALANRMQLEDAGLVPGSIQTSGNCVCC
QKELFFSYRRDDGETGRQMGFIMLKEA

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=250, Percent_Identity=32.8, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI190194372, Length=250, Percent_Identity=32.8, Blast_Score=127, Evalue=1e-29,
Organism=Escherichia coli, GI1788945, Length=237, Percent_Identity=35.4430379746835, Blast_Score=124, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 29023; Mature: 29023

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METTRIGRIHYLAPSFETTAPATIQGFTTRHEGISRPPYNSLNLGMNTDDSPHNVEGNRS
CCCCEEEEEEEECCCCCCCCCCEEECCCHHCCCCCCCCCCCEECCCCCCCCCCCCCCCHH
LLARAFGIPQERLVTVRQNHGTDILVIDAPNDDFSHFTALEADAIITNQPGVMIGVTVAD
HHHHHHCCCHHHEEEEEECCCCEEEEEECCCCCCHHEEEECCCEEEECCCCEEEEEEHHH
CVPLLLFDPAKKVIAAVHAGWQGTAARIAAQAAEGMKQVFGSRPRDIQAAIGPCINPCCY
HHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHH
EVDQPVKDGFKNQAELWNAVAEPAGNGKWRLDLALANRMQLEDAGLVPGSIQTSGNCVCC
HCCCHHHHHCCHHHHHHHHHHCCCCCCEEEEEEEECCCEECCCCCCCCCCCCCCCCEEEE
QKELFFSYRRDDGETGRQMGFIMLKEA
EHHHHHHHCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
METTRIGRIHYLAPSFETTAPATIQGFTTRHEGISRPPYNSLNLGMNTDDSPHNVEGNRS
CCCCEEEEEEEECCCCCCCCCCEEECCCHHCCCCCCCCCCCEECCCCCCCCCCCCCCCHH
LLARAFGIPQERLVTVRQNHGTDILVIDAPNDDFSHFTALEADAIITNQPGVMIGVTVAD
HHHHHHCCCHHHEEEEEECCCCEEEEEECCCCCCHHEEEECCCEEEECCCCEEEEEEHHH
CVPLLLFDPAKKVIAAVHAGWQGTAARIAAQAAEGMKQVFGSRPRDIQAAIGPCINPCCY
HHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHH
EVDQPVKDGFKNQAELWNAVAEPAGNGKWRLDLALANRMQLEDAGLVPGSIQTSGNCVCC
HCCCHHHHHCCHHHHHHHHHHCCCCCCEEEEEEEECCCEECCCCCCCCCCCCCCCCEEEE
QKELFFSYRRDDGETGRQMGFIMLKEA
EHHHHHHHCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]