Click here to switch to the map view.

The map label for this gene is vanR [H]

Identifier: 189354057

GI number: 189354057

Start: 2387596

End: 2388366

Strand: Direct

Name: vanR [H]

Synonym: BMULJ_05310

Alternate gene names: 189354057

Gene position: 2387596-2388366 (Clockwise)

Preceding gene: 189354052

Following gene: 189354058

Centisome position: 96.54

GC content: 73.41

Gene sequence:

>771_bases
ATGACGACCGTCGACACGCCCGCTTCCGACACGCGCCCTGCCGCGTCCCCGTCCCAGACCGTCCGCGCGCTGCTCGGGCT
GCGCGAGCTCATCGTCGGCGGCGAACTCGGCCCCGGCGAGCGCATCTCCGAGCTGTGGGTCGTCGAGCGGCTCGGCGTGT
CGCGCACGCCGGTGCGCGCGGCGCTGATCCGGCTGCAGGAAGAAGGGCTGATCGAGCCGATCGCGACCGGCGGCTTTGCG
GTACGCGCGTTCTCCGCGCGCGAGATCGGCGACGCGATCGAGCTGCGCGGCACGCTCGAAGGGCTGGCCGCGCGTTTCGC
GGCCGAGCGCGGCGTGCCGGCGTCGACGTTGCGCAGCCTGCATGCGTGCGCGGACGAAATCGACGGGCTGCTGGCCGGCC
CGCTGACCGACGACACCTTCTCGCGCTACGTCGACGCGAACGCGCGCTTTCACCGCCTGCTCGCCGGCGCGGCGGGCAGC
GACGTCGTCGCGCGGCAGATCGACAAGGTCGCGACGCTGCCGTTCGCGTCGGCGAGCGCGTTCGTCGTCGTGCAGTCGCT
CGATCCGCGTGCACGCGAAACGCTCGTCGTCGCGCAGGCGCAGCATCGCGCCGTGCTCGATGCGATCGCGCGCCGCCAGG
GCGCGCGGGCCGAAGCGCTGATGCGCGAGCACGCGCAGATCGCGCACGACAATCTGCGGCGCGTGCTCGACAACCAGCGG
GCGATGACGAAGCTCGCGGGCGGCAACCTGATCCGTCGCGACGCCGGCTGA

Upstream 100 bases:

>100_bases
TTCCACTTGATTTCGTCTCGGCGATGTATACAGTTTTATCAAGCAACCTGATAACCCATCGCGCCGCGATCGCTCGCGGC
GCGCACGTTTTCCGCTACCG

Downstream 100 bases:

>100_bases
GCGGCGCGCGGCATTTTCTCGTGCGGCGCGCGACGCGCCGCTTTTCCGAAGACGAACATGGCGTGCAAGCACGCCCTGGA
GGAGACGCATGTTCCTGAAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MTTVDTPASDTRPAASPSQTVRALLGLRELIVGGELGPGERISELWVVERLGVSRTPVRAALIRLQEEGLIEPIATGGFA
VRAFSAREIGDAIELRGTLEGLAARFAAERGVPASTLRSLHACADEIDGLLAGPLTDDTFSRYVDANARFHRLLAGAAGS
DVVARQIDKVATLPFASASAFVVVQSLDPRARETLVVAQAQHRAVLDAIARRQGARAEALMREHAQIAHDNLRRVLDNQR
AMTKLAGGNLIRRDAG

Sequences:

>Translated_256_residues
MTTVDTPASDTRPAASPSQTVRALLGLRELIVGGELGPGERISELWVVERLGVSRTPVRAALIRLQEEGLIEPIATGGFA
VRAFSAREIGDAIELRGTLEGLAARFAAERGVPASTLRSLHACADEIDGLLAGPLTDDTFSRYVDANARFHRLLAGAAGS
DVVARQIDKVATLPFASASAFVVVQSLDPRARETLVVAQAQHRAVLDAIARRQGARAEALMREHAQIAHDNLRRVLDNQR
AMTKLAGGNLIRRDAG
>Mature_255_residues
TTVDTPASDTRPAASPSQTVRALLGLRELIVGGELGPGERISELWVVERLGVSRTPVRAALIRLQEEGLIEPIATGGFAV
RAFSAREIGDAIELRGTLEGLAARFAAERGVPASTLRSLHACADEIDGLLAGPLTDDTFSRYVDANARFHRLLAGAAGSD
VVARQIDKVATLPFASASAFVVVQSLDPRARETLVVAQAQHRAVLDAIARRQGARAEALMREHAQIAHDNLRRVLDNQRA
MTKLAGGNLIRRDAG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27319; Mature: 27188

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTVDTPASDTRPAASPSQTVRALLGLRELIVGGELGPGERISELWVVERLGVSRTPVRA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHH
ALIRLQEEGLIEPIATGGFAVRAFSAREIGDAIELRGTLEGLAARFAAERGVPASTLRSL
HHHHHHHCCCCCHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
HACADEIDGLLAGPLTDDTFSRYVDANARFHRLLAGAAGSDVVARQIDKVATLPFASASA
HHHHHHHCCHHCCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCE
FVVVQSLDPRARETLVVAQAQHRAVLDAIARRQGARAEALMREHAQIAHDNLRRVLDNQR
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AMTKLAGGNLIRRDAG
HHHHHHCCCEECCCCC
>Mature Secondary Structure 
TTVDTPASDTRPAASPSQTVRALLGLRELIVGGELGPGERISELWVVERLGVSRTPVRA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHH
ALIRLQEEGLIEPIATGGFAVRAFSAREIGDAIELRGTLEGLAARFAAERGVPASTLRSL
HHHHHHHCCCCCHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
HACADEIDGLLAGPLTDDTFSRYVDANARFHRLLAGAAGSDVVARQIDKVATLPFASASA
HHHHHHHCCHHCCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCE
FVVVQSLDPRARETLVVAQAQHRAVLDAIARRQGARAEALMREHAQIAHDNLRRVLDNQR
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AMTKLAGGNLIRRDAG
HHHHHHCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]