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The map label for this gene is cmpR [H]

Identifier: 189353746

GI number: 189353746

Start: 2017155

End: 2018039

Strand: Direct

Name: cmpR [H]

Synonym: BMULJ_04991

Alternate gene names: 189353746

Gene position: 2017155-2018039 (Clockwise)

Preceding gene: 189353744

Following gene: 189353748

Centisome position: 81.56

GC content: 71.19

Gene sequence:

>885_bases
ATGCGTGAGATCAGCCTGGACCGTCTGCGCACGTTGGTCGCCGTGGCCGAGCGTGGGTCGTTCGCCGATGCGGCGCGTGC
GCTGCACCTCGCGCCGCCGACGGTCAGTCTCCATATCGCCGAACTCGAAGCGCGCATCGGCGCGCCGCTGCTGTCGCGCA
AGCGCGGGCACGTCGGGCCGACGTCGATCGGCACGGTGCTGGTCGAGCGTGCGCGCCGCCTGCTCGCCGACGCCGAGCAG
GCGCTCGACGACGTTCAGCGTCAGGTCGCGGGGCTCGAAGGACGCGTGCGCCTCGGCGCGTCGACCGGCGTGATCGCGCA
TCTGCTGCCGCAGGCGCTCGACGCGCTGCGCGCGCCCCATCCCGCCATCGACGTTCAGATCGCGGTGCTGACTTCGCAGG
AAACGCTGTCGCGGCTCGTGGACGGCACGCTCGACGTCGGGCTCGTCGCACTGCCGCAGCCGCCGGTGGCCGGACTCGTG
ATCAAGCCGTGGCGGCGCGACCCCGTGATGGCGTTCGTGCCGGCGCATTGGCGCTGTCCGGCGCGCGTGACGCCCGAATG
GCTCGCGGCACGGCCGCTCGTTCTCAACGATGCGAGCACGCATCTGTCGCGGCTGACGGCCGAATGGTTCGCGGCGGCCG
GACACCATCCGGTGCCGCGCATTCAGCTGAATTACAACGATGCGATCAAGAGTCTGGTGGCGGCCGGTTACGGTGCGGCG
CTGTTGCCGCATGAGGCTGCGACGCCGCTAGCCGACGCGCGCATCGTGATGCGTCCGCTGCGCCCCGGCCTGTGGCGACG
GCTCGGCATCGCGCATCGTGCCGGACACGTCGAGCGTGCGACGCAACACGTGCTCGACGCGTTGTGGGATTTGCGGCTCG
CGTAG

Upstream 100 bases:

>100_bases
GACAGTTGAAAACGAGCCCCTATGTTGCGCGGACGTCTAGAATAGGAAAAGTTGAATTTCATGATCTATACGTTCAGCTT
TTCTGAATCCGGAGATCGCC

Downstream 100 bases:

>100_bases
CGCACGGCCGCCTGCGCGACGGGTTCGCGCGATCGATCGTCGCCGGCATGCGCGGGCGCGCATGCCGGTGCGAGCGTCAG
TCCTGGCCGTACACGGTGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MREISLDRLRTLVAVAERGSFADAARALHLAPPTVSLHIAELEARIGAPLLSRKRGHVGPTSIGTVLVERARRLLADAEQ
ALDDVQRQVAGLEGRVRLGASTGVIAHLLPQALDALRAPHPAIDVQIAVLTSQETLSRLVDGTLDVGLVALPQPPVAGLV
IKPWRRDPVMAFVPAHWRCPARVTPEWLAARPLVLNDASTHLSRLTAEWFAAAGHHPVPRIQLNYNDAIKSLVAAGYGAA
LLPHEAATPLADARIVMRPLRPGLWRRLGIAHRAGHVERATQHVLDALWDLRLA

Sequences:

>Translated_294_residues
MREISLDRLRTLVAVAERGSFADAARALHLAPPTVSLHIAELEARIGAPLLSRKRGHVGPTSIGTVLVERARRLLADAEQ
ALDDVQRQVAGLEGRVRLGASTGVIAHLLPQALDALRAPHPAIDVQIAVLTSQETLSRLVDGTLDVGLVALPQPPVAGLV
IKPWRRDPVMAFVPAHWRCPARVTPEWLAARPLVLNDASTHLSRLTAEWFAAAGHHPVPRIQLNYNDAIKSLVAAGYGAA
LLPHEAATPLADARIVMRPLRPGLWRRLGIAHRAGHVERATQHVLDALWDLRLA
>Mature_294_residues
MREISLDRLRTLVAVAERGSFADAARALHLAPPTVSLHIAELEARIGAPLLSRKRGHVGPTSIGTVLVERARRLLADAEQ
ALDDVQRQVAGLEGRVRLGASTGVIAHLLPQALDALRAPHPAIDVQIAVLTSQETLSRLVDGTLDVGLVALPQPPVAGLV
IKPWRRDPVMAFVPAHWRCPARVTPEWLAARPLVLNDASTHLSRLTAEWFAAAGHHPVPRIQLNYNDAIKSLVAAGYGAA
LLPHEAATPLADARIVMRPLRPGLWRRLGIAHRAGHVERATQHVLDALWDLRLA

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=249, Percent_Identity=29.718875502008, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790208, Length=247, Percent_Identity=27.1255060728745, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790399, Length=275, Percent_Identity=25.8181818181818, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1788297, Length=262, Percent_Identity=27.4809160305344, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788481, Length=292, Percent_Identity=26.027397260274, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788748, Length=293, Percent_Identity=29.0102389078498, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788887, Length=267, Percent_Identity=27.3408239700375, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI2367136, Length=291, Percent_Identity=26.4604810996564, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=153, Percent_Identity=26.1437908496732, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI157672245, Length=247, Percent_Identity=26.3157894736842, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790262, Length=277, Percent_Identity=26.7148014440433, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31829; Mature: 31829

Theoretical pI: Translated: 11.10; Mature: 11.10

Prosite motif: PS50931 HTH_LYSR ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREISLDRLRTLVAVAERGSFADAARALHLAPPTVSLHIAELEARIGAPLLSRKRGHVGP
CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEHHHHHHHHCCHHHHCCCCCCCC
TSIGTVLVERARRLLADAEQALDDVQRQVAGLEGRVRLGASTGVIAHLLPQALDALRAPH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCC
PAIDVQIAVLTSQETLSRLVDGTLDVGLVALPQPPVAGLVIKPWRRDPVMAFVPAHWRCP
CCCEEEEEEEECHHHHHHHHCCCCCCCEEECCCCCCCCEEECCCCCCCCEEEECCCCCCC
ARVTPEWLAARPLVLNDASTHLSRLTAEWFAAAGHHPVPRIQLNYNDAIKSLVAAGYGAA
CCCCHHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCCC
LLPHEAATPLADARIVMRPLRPGLWRRLGIAHRAGHVERATQHVLDALWDLRLA
CCCCHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MREISLDRLRTLVAVAERGSFADAARALHLAPPTVSLHIAELEARIGAPLLSRKRGHVGP
CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEHHHHHHHHCCHHHHCCCCCCCC
TSIGTVLVERARRLLADAEQALDDVQRQVAGLEGRVRLGASTGVIAHLLPQALDALRAPH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCCC
PAIDVQIAVLTSQETLSRLVDGTLDVGLVALPQPPVAGLVIKPWRRDPVMAFVPAHWRCP
CCCEEEEEEEECHHHHHHHHCCCCCCCEEECCCCCCCCEEECCCCCCCCEEEECCCCCCC
ARVTPEWLAARPLVLNDASTHLSRLTAEWFAAAGHHPVPRIQLNYNDAIKSLVAAGYGAA
CCCCHHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCCC
LLPHEAATPLADARIVMRPLRPGLWRRLGIAHRAGHVERATQHVLDALWDLRLA
CCCCHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA