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The map label for this gene is lsrD [H]

Identifier: 189353710

GI number: 189353710

Start: 1973699

End: 1974751

Strand: Reverse

Name: lsrD [H]

Synonym: BMULJ_04955

Alternate gene names: 189353710

Gene position: 1974751-1973699 (Counterclockwise)

Preceding gene: 189353711

Following gene: 189353709

Centisome position: 79.85

GC content: 68.0

Gene sequence:

>1053_bases
GTGACCACGCGTTTTCATCGGCCTGCCGCGGCGTTGCCGATTCCCGCCGACGTCGCCGGCTTGCTCGGCTTCCTCGTATT
CGTCGTCGCCGCGATGAGCGTCGCGTCGGACCGGTTCCTGACGGCCGGCACGTTCGTGTCGATCGCGTTCCAGCTGCCCG
AGCTCGGGCTCTTCACGCTGGCGATGCTGATGCCGCTGATCTCGGGCGGCTTCAACCTCGCGGTGACGTTTACCGCCAAC
ATCGCCGGGCTCGCGATGGCATGGGTGATCCAGTCGCACGGCGGCGTGGATGCCGGCATCGGCACGATCGCGTTCGGCAT
GCTCGCCGCGCTCGCGACGGGCGCGGCGGCCGGCTGGCTGATCGGCGCGGTCATCGCGCATACGGGCGCGAGCCCGATTC
TCGTGTCGCTGTCGGCCATGATCTTCCTGCGCGGGCTCGGCGAATTCCTGACACGCGGCGGCGACATCTCCGGCTTCCCG
CCGCTCGTGCGCGCGATGGGCAATGGCCTGTGGCTCGGTGTGCCGGTGCCGCTCTGGATCTTCGCGGTTTGCGCGCTCGG
CTGGCATGTGCTGATGACGTATTCGCGGCTTGGCTTCGTGACGCGGATGATCGGTTCGAACGTCGAAGCCACGCGCTATT
CGGGTATCGCGACGGCGCGCGCGATCACGCGCGTCTACATGCTGTCCGGGCTGATGTGCGGCGTCGCGGGCATCGTGATG
CTGTCGCGATTCAATTCGGTGCGGGTCGGGCACGGCGAAGCGTTCCTGCTGATTTCGGTCCTCGCGTGCTTCCTCGGGCG
CGTCGATCCGTTCGGCGGGTTCGGTCGCGTCGTGCCGGTCGTGATCGCACTGGTGATCCTGCAGGTGATCGCGTCCGGGC
TCAATCTGCTCGGCGCGAGCCAGCACCTCGCCACCGCGCTGTGGGGCGCGTTCCTGCTTGCCGTGATGCTGATCCGCTGG
GCATGGGCGTACGGCGTTGACGCGTCCGTTCGCCGATTACGCGCGGGATTCCGCGCACGGCGGCCCGGCACACCTTCGAC
GAAAGGAGAATGA

Upstream 100 bases:

>100_bases
TCGTCGGCGCCGTGATCCTGATCGCGATCACGCTGTCGAGCGATCGCGTCGCGCGACTCATCGGTTCGCGCTTTCCATCG
TCGACTGCGAGGGCGCCATC

Downstream 100 bases:

>100_bases
ATGAACAAGCTTGGCGTACATGCACTGGTCTGGGAAGCCGGCTGGAGCCGCGACGAATGCGCGCGCGCAATCGCGCGCAC
GGCCGAAACCGGCTTCGACT

Product: simple sugar transport system permease protein

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: AI-2 import system permease protein lsrD [H]

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MTTRFHRPAAALPIPADVAGLLGFLVFVVAAMSVASDRFLTAGTFVSIAFQLPELGLFTLAMLMPLISGGFNLAVTFTAN
IAGLAMAWVIQSHGGVDAGIGTIAFGMLAALATGAAAGWLIGAVIAHTGASPILVSLSAMIFLRGLGEFLTRGGDISGFP
PLVRAMGNGLWLGVPVPLWIFAVCALGWHVLMTYSRLGFVTRMIGSNVEATRYSGIATARAITRVYMLSGLMCGVAGIVM
LSRFNSVRVGHGEAFLLISVLACFLGRVDPFGGFGRVVPVVIALVILQVIASGLNLLGASQHLATALWGAFLLAVMLIRW
AWAYGVDASVRRLRAGFRARRPGTPSTKGE

Sequences:

>Translated_350_residues
MTTRFHRPAAALPIPADVAGLLGFLVFVVAAMSVASDRFLTAGTFVSIAFQLPELGLFTLAMLMPLISGGFNLAVTFTAN
IAGLAMAWVIQSHGGVDAGIGTIAFGMLAALATGAAAGWLIGAVIAHTGASPILVSLSAMIFLRGLGEFLTRGGDISGFP
PLVRAMGNGLWLGVPVPLWIFAVCALGWHVLMTYSRLGFVTRMIGSNVEATRYSGIATARAITRVYMLSGLMCGVAGIVM
LSRFNSVRVGHGEAFLLISVLACFLGRVDPFGGFGRVVPVVIALVILQVIASGLNLLGASQHLATALWGAFLLAVMLIRW
AWAYGVDASVRRLRAGFRARRPGTPSTKGE
>Mature_349_residues
TTRFHRPAAALPIPADVAGLLGFLVFVVAAMSVASDRFLTAGTFVSIAFQLPELGLFTLAMLMPLISGGFNLAVTFTANI
AGLAMAWVIQSHGGVDAGIGTIAFGMLAALATGAAAGWLIGAVIAHTGASPILVSLSAMIFLRGLGEFLTRGGDISGFPP
LVRAMGNGLWLGVPVPLWIFAVCALGWHVLMTYSRLGFVTRMIGSNVEATRYSGIATARAITRVYMLSGLMCGVAGIVML
SRFNSVRVGHGEAFLLISVLACFLGRVDPFGGFGRVVPVVIALVILQVIASGLNLLGASQHLATALWGAFLLAVMLIRWA
WAYGVDASVRRLRAGFRARRPGTPSTKGE

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=262, Percent_Identity=30.5343511450382, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787794, Length=332, Percent_Identity=26.5060240963855, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1790191, Length=282, Percent_Identity=29.0780141843972, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790524, Length=299, Percent_Identity=25.752508361204, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36617; Mature: 36486

Theoretical pI: Translated: 11.73; Mature: 11.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRFHRPAAALPIPADVAGLLGFLVFVVAAMSVASDRFLTAGTFVSIAFQLPELGLFTL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHH
AMLMPLISGGFNLAVTFTANIAGLAMAWVIQSHGGVDAGIGTIAFGMLAALATGAAAGWL
HHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IGAVIAHTGASPILVSLSAMIFLRGLGEFLTRGGDISGFPPLVRAMGNGLWLGVPVPLWI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEECCCHHHHH
FAVCALGWHVLMTYSRLGFVTRMIGSNVEATRYSGIATARAITRVYMLSGLMCGVAGIVM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSRFNSVRVGHGEAFLLISVLACFLGRVDPFGGFGRVVPVVIALVILQVIASGLNLLGAS
HHHCCCCEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
QHLATALWGAFLLAVMLIRWAWAYGVDASVRRLRAGFRARRPGTPSTKGE
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TTRFHRPAAALPIPADVAGLLGFLVFVVAAMSVASDRFLTAGTFVSIAFQLPELGLFTL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHH
AMLMPLISGGFNLAVTFTANIAGLAMAWVIQSHGGVDAGIGTIAFGMLAALATGAAAGWL
HHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IGAVIAHTGASPILVSLSAMIFLRGLGEFLTRGGDISGFPPLVRAMGNGLWLGVPVPLWI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEECCCHHHHH
FAVCALGWHVLMTYSRLGFVTRMIGSNVEATRYSGIATARAITRVYMLSGLMCGVAGIVM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSRFNSVRVGHGEAFLLISVLACFLGRVDPFGGFGRVVPVVIALVILQVIASGLNLLGAS
HHHCCCCEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
QHLATALWGAFLLAVMLIRWAWAYGVDASVRRLRAGFRARRPGTPSTKGE
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA