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The map label for this gene is bfrD [H]

Identifier: 189353698

GI number: 189353698

Start: 1958624

End: 1960828

Strand: Reverse

Name: bfrD [H]

Synonym: BMULJ_04943

Alternate gene names: 189353698

Gene position: 1960828-1958624 (Counterclockwise)

Preceding gene: 189353699

Following gene: 189353697

Centisome position: 79.28

GC content: 64.94

Gene sequence:

>2205_bases
ATGCCGAACAGGACCCCGTTCGCGAGCGCGCTCGCGTTGGCCTTTGCTTTGCCTATTGCTTCGCCCGCCGTCGCACAGAG
TGCGCGTGTCGACGCTTCGCCCGCTGCCGCCGCACCCGGCGATTCGGCGCCGGCCGCCTCCAGCGCTGTGCGCGACGCGC
TGCCGACGATCAGCGTATCGGGGCAGGCCGTGCAGCAGGACTTCCAGGCCGAGCGCTCGACGGTCGGCGCGAAGACGCCC
ACCGCGCTGCGCGACATTCCGCAGTCGGTCACGGTCATCAACAAGGCGCTGATCGAATCGCAAGGGCTCACGTCGTTCCA
GGATGCGTTGCGCAATGCGCCGGGCATCACGATCGGCGGCGCGGAAGGCGGGCAGATCGGCAACAACATCAACCTGCGCG
GCTTCACCGCGCAGAACGACATCTATCTGGACGGCTTTCGCGATCGCAACCAGTACTACCGCGACACCTTCGATCTCGAT
GCGGTCGAGGTGCTGTACGGCCCGTCGTCGATGCTGTTCGGGCGCGGCTCGACGGGCGGCGTGATCAACCAGGTCTCGAA
GAAGGCGAACCTGAAGCCGTCGGCGGAAGTCTCGACGACGATCGGTACCGACGACCGCTATCGCACGAGCGTCGATCTGA
ACCGGCCGCTCGGCGCGACCTCGGCGTTGCGCATCAACGCGTTCGGCCAGTCGCTCGGTTCGACGCGCGACGTGATGAAG
AACAAGGACTACGGGATCGCGCCGGAACTGCGCTTCGGTATCGGCACGCCGACCGAGATCACGCTGTCCGCGCTGATCCA
GCACAACTACGACATGCCCGATTACGGCGTGCTCGCCGTGAACGGCCATCCGGCACCCGTATCGAAACACACGTTCTACG
GATTGACCGACGACCGCACGATCCAGGACGTGCAGACCGTGTCCGCGCGGATCGATCATCGCGTGAACGACGCGCTGACG
ATCAGCAACCGCACGTCGTTCTCGCATTCGATGACGGACGCGCGCGAGACGGCCGCGAATGCGGTGCTGACGGGGCCGCT
GTCGTCGAGCACCGCGTTGACGAACGGCAACTACACGTCGCTGCCGATGTCGGCGCTGTACGTGCGGCTCGCGAGCCACG
ATCGCGTGATCGAAAACCATTCGATCGACAACGATACGATGGCGCATTTCAAGTTCGACACGGGCTTCGTCAAGCACGAC
CTGATCGCGGGCGTCGAAGTCGGCCACGACAGCTATACGAACCAGGCATACACGCGCAGCGGGCTACCGATCCTGTCGCT
GATCGATCCGGCGTATCTGTCGTCGAGTGCGGCGAATGCGACGCAGACGCCGGCCAACCACGCGGAATCGGGCGCGACGA
CGCTCGCCGCGTATCTGAACGACACCGTATCGATCGGCCGCGACTGGAAACTCGTCGGCGGGCTGCGCTGGGATCGCTTC
CGCGCGCATCTCGCGAACACGATCAGCGCGCCGGGCTACGCGTCGCAGACAAACAACTTCACGAGCGTGCGTGCCGGCGT
GATCTATCAGCCGACCGAATCGCAGTCGTACTACTTCTCGTACGGCACGTCGTTCAACCCGTCGCTCGAGACGCTGACGG
TCACGAACAACACGCAGAACCTGTCGCCCGAACACACGAAGTCGTACGAGGTCGGCGGCAAGTGGGATCTGCTGAACGAC
AATCTGTCGGTCACGTCGGCGCTGTTCCAGCAGGAGAAGAGCAATGCGCGCACGCAGACCTCGACGGGCGAGTACCTGCT
CGAAGGCGACATTCGCGTGCGCGGCTTCCAGGCGAGCGTGACGGGCCATATCACGCCGAAGTGGCAGGTGTTCGGCAGCT
ATACGTACATGAACGGCACGATCCTCAGTGCGCGCGACGGCACGCAGGGCAAGACGCTCGCGAACACGCCGCGCAACACG
TTCACGTTGTGGACGACGTACGCCTTCACGCCGCACTGGGAAATCGGCGGCGGCCCGACCTACATGTCGGGGCGCTACGC
GGCCAACACGAACTACGTGCAGGTGGGCGGCTACACGCGCTGGGACGCGACGGCCGCGTATCACGCAAAGCGGTGGGACC
TGCGGCTCAACGTGCTGAACCTGACCGACAAGTTCTATTACGATGCGCTGATCCAGTCGGACGGCGGCCGCGCGGTGCCG
GGCATCGGGCGCACGTTCCTCGCGACGCTCGACTACCGGTTCTGA

Upstream 100 bases:

>100_bases
GCTGATTCCGAGCGTCCGCGGCCGGCAAGCCAACGCATCGTGCCTCGTGCGCGCGTATCGCCGCGCGTCCACGCGGCCGG
TTCATCCACACTGAATTGCC

Downstream 100 bases:

>100_bases
GCGGCGCGTGCGGCCGGCGTGCCAATCGACGAAACAGGTGAAACGATGCTTGTACACATTCCGAACGTGCTGACGCCCGA
GCAGGTGCGCATGATCCGCG

Product: outer membrane receptor for monomeric catechols

Products: NA

Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]

Number of amino acids: Translated: 734; Mature: 733

Protein sequence:

>734_residues
MPNRTPFASALALAFALPIASPAVAQSARVDASPAAAAPGDSAPAASSAVRDALPTISVSGQAVQQDFQAERSTVGAKTP
TALRDIPQSVTVINKALIESQGLTSFQDALRNAPGITIGGAEGGQIGNNINLRGFTAQNDIYLDGFRDRNQYYRDTFDLD
AVEVLYGPSSMLFGRGSTGGVINQVSKKANLKPSAEVSTTIGTDDRYRTSVDLNRPLGATSALRINAFGQSLGSTRDVMK
NKDYGIAPELRFGIGTPTEITLSALIQHNYDMPDYGVLAVNGHPAPVSKHTFYGLTDDRTIQDVQTVSARIDHRVNDALT
ISNRTSFSHSMTDARETAANAVLTGPLSSSTALTNGNYTSLPMSALYVRLASHDRVIENHSIDNDTMAHFKFDTGFVKHD
LIAGVEVGHDSYTNQAYTRSGLPILSLIDPAYLSSSAANATQTPANHAESGATTLAAYLNDTVSIGRDWKLVGGLRWDRF
RAHLANTISAPGYASQTNNFTSVRAGVIYQPTESQSYYFSYGTSFNPSLETLTVTNNTQNLSPEHTKSYEVGGKWDLLND
NLSVTSALFQQEKSNARTQTSTGEYLLEGDIRVRGFQASVTGHITPKWQVFGSYTYMNGTILSARDGTQGKTLANTPRNT
FTLWTTYAFTPHWEIGGGPTYMSGRYAANTNYVQVGGYTRWDATAAYHAKRWDLRLNVLNLTDKFYYDALIQSDGGRAVP
GIGRTFLATLDYRF

Sequences:

>Translated_734_residues
MPNRTPFASALALAFALPIASPAVAQSARVDASPAAAAPGDSAPAASSAVRDALPTISVSGQAVQQDFQAERSTVGAKTP
TALRDIPQSVTVINKALIESQGLTSFQDALRNAPGITIGGAEGGQIGNNINLRGFTAQNDIYLDGFRDRNQYYRDTFDLD
AVEVLYGPSSMLFGRGSTGGVINQVSKKANLKPSAEVSTTIGTDDRYRTSVDLNRPLGATSALRINAFGQSLGSTRDVMK
NKDYGIAPELRFGIGTPTEITLSALIQHNYDMPDYGVLAVNGHPAPVSKHTFYGLTDDRTIQDVQTVSARIDHRVNDALT
ISNRTSFSHSMTDARETAANAVLTGPLSSSTALTNGNYTSLPMSALYVRLASHDRVIENHSIDNDTMAHFKFDTGFVKHD
LIAGVEVGHDSYTNQAYTRSGLPILSLIDPAYLSSSAANATQTPANHAESGATTLAAYLNDTVSIGRDWKLVGGLRWDRF
RAHLANTISAPGYASQTNNFTSVRAGVIYQPTESQSYYFSYGTSFNPSLETLTVTNNTQNLSPEHTKSYEVGGKWDLLND
NLSVTSALFQQEKSNARTQTSTGEYLLEGDIRVRGFQASVTGHITPKWQVFGSYTYMNGTILSARDGTQGKTLANTPRNT
FTLWTTYAFTPHWEIGGGPTYMSGRYAANTNYVQVGGYTRWDATAAYHAKRWDLRLNVLNLTDKFYYDALIQSDGGRAVP
GIGRTFLATLDYRF
>Mature_733_residues
PNRTPFASALALAFALPIASPAVAQSARVDASPAAAAPGDSAPAASSAVRDALPTISVSGQAVQQDFQAERSTVGAKTPT
ALRDIPQSVTVINKALIESQGLTSFQDALRNAPGITIGGAEGGQIGNNINLRGFTAQNDIYLDGFRDRNQYYRDTFDLDA
VEVLYGPSSMLFGRGSTGGVINQVSKKANLKPSAEVSTTIGTDDRYRTSVDLNRPLGATSALRINAFGQSLGSTRDVMKN
KDYGIAPELRFGIGTPTEITLSALIQHNYDMPDYGVLAVNGHPAPVSKHTFYGLTDDRTIQDVQTVSARIDHRVNDALTI
SNRTSFSHSMTDARETAANAVLTGPLSSSTALTNGNYTSLPMSALYVRLASHDRVIENHSIDNDTMAHFKFDTGFVKHDL
IAGVEVGHDSYTNQAYTRSGLPILSLIDPAYLSSSAANATQTPANHAESGATTLAAYLNDTVSIGRDWKLVGGLRWDRFR
AHLANTISAPGYASQTNNFTSVRAGVIYQPTESQSYYFSYGTSFNPSLETLTVTNNTQNLSPEHTKSYEVGGKWDLLNDN
LSVTSALFQQEKSNARTQTSTGEYLLEGDIRVRGFQASVTGHITPKWQVFGSYTYMNGTILSARDGTQGKTLANTPRNTF
TLWTTYAFTPHWEIGGGPTYMSGRYAANTNYVQVGGYTRWDATAAYHAKRWDLRLNVLNLTDKFYYDALIQSDGGRAVPG
IGRTFLATLDYRF

Specific function: Probably involved in iron transport [H]

COG id: COG4774

COG function: function code P; Outer membrane receptor for monomeric catechols

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787024, Length=714, Percent_Identity=32.3529411764706, Blast_Score=291, Evalue=9e-80,
Organism=Escherichia coli, GI1786344, Length=731, Percent_Identity=25.8549931600547, Blast_Score=182, Evalue=7e-47,
Organism=Escherichia coli, GI1787344, Length=263, Percent_Identity=28.8973384030418, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 79378; Mature: 79246

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNRTPFASALALAFALPIASPAVAQSARVDASPAAAAPGDSAPAASSAVRDALPTISVS
CCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECC
GQAVQQDFQAERSTVGAKTPTALRDIPQSVTVINKALIESQGLTSFQDALRNAPGITIGG
CHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEC
AEGGQIGNNINLRGFTAQNDIYLDGFRDRNQYYRDTFDLDAVEVLYGPSSMLFGRGSTGG
CCCCCCCCCCEEEEEECCCCEEECCCCCCCHHHCCCCCCCEEEEEECCCHHEEECCCCCH
VINQVSKKANLKPSAEVSTTIGTDDRYRTSVDLNRPLGATSALRINAFGQSLGSTRDVMK
HHHHHHHHCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEEHHHHHCCCHHHHHC
NKDYGIAPELRFGIGTPTEITLSALIQHNYDMPDYGVLAVNGHPAPVSKHTFYGLTDDRT
CCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCH
IQDVQTVSARIDHRVNDALTISNRTSFSHSMTDARETAANAVLTGPLSSSTALTNGNYTS
HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEECCCCCC
LPMSALYVRLASHDRVIENHSIDNDTMAHFKFDTGFVKHDLIAGVEVGHDSYTNQAYTRS
CCHHHHHEEHHCCCCCHHCCCCCCCCEEEEEECCCCHHHHHHCCEEECCCCCCCCCCCCC
GLPILSLIDPAYLSSSAANATQTPANHAESGATTLAAYLNDTVSIGRDWKLVGGLRWDRF
CCEEEECCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHCCCCEEEECCCCHHHH
RAHLANTISAPGYASQTNNFTSVRAGVIYQPTESQSYYFSYGTSFNPSLETLTVTNNTQN
HHHHHHHCCCCCCCCCCCCCEEEEECEEECCCCCCCEEEEECCCCCCCCEEEEEECCCCC
LSPEHTKSYEVGGKWDLLNDNLSVTSALFQQEKSNARTQTSTGEYLLEGDIRVRGFQASV
CCCCCCCCEECCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEEEE
TGHITPKWQVFGSYTYMNGTILSARDGTQGKTLANTPRNTFTLWTTYAFTPHWEIGGGPT
EECCCCCEEEEEEEEEECCEEEECCCCCCCCEECCCCCCEEEEEEEEEECCCEECCCCCC
YMSGRYAANTNYVQVGGYTRWDATAAYHAKRWDLRLNVLNLTDKFYYDALIQSDGGRAVP
CCCCEEECCCCEEEECCEEECCCHHHHEEEEEEEEEEEEECCHHHHEEHEEECCCCCCCC
GIGRTFLATLDYRF
CCCCEEEEEECCCC
>Mature Secondary Structure 
PNRTPFASALALAFALPIASPAVAQSARVDASPAAAAPGDSAPAASSAVRDALPTISVS
CCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECC
GQAVQQDFQAERSTVGAKTPTALRDIPQSVTVINKALIESQGLTSFQDALRNAPGITIGG
CHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEC
AEGGQIGNNINLRGFTAQNDIYLDGFRDRNQYYRDTFDLDAVEVLYGPSSMLFGRGSTGG
CCCCCCCCCCEEEEEECCCCEEECCCCCCCHHHCCCCCCCEEEEEECCCHHEEECCCCCH
VINQVSKKANLKPSAEVSTTIGTDDRYRTSVDLNRPLGATSALRINAFGQSLGSTRDVMK
HHHHHHHHCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEEHHHHHCCCHHHHHC
NKDYGIAPELRFGIGTPTEITLSALIQHNYDMPDYGVLAVNGHPAPVSKHTFYGLTDDRT
CCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCH
IQDVQTVSARIDHRVNDALTISNRTSFSHSMTDARETAANAVLTGPLSSSTALTNGNYTS
HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEECCCCCC
LPMSALYVRLASHDRVIENHSIDNDTMAHFKFDTGFVKHDLIAGVEVGHDSYTNQAYTRS
CCHHHHHEEHHCCCCCHHCCCCCCCCEEEEEECCCCHHHHHHCCEEECCCCCCCCCCCCC
GLPILSLIDPAYLSSSAANATQTPANHAESGATTLAAYLNDTVSIGRDWKLVGGLRWDRF
CCEEEECCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHCCCCEEEECCCCHHHH
RAHLANTISAPGYASQTNNFTSVRAGVIYQPTESQSYYFSYGTSFNPSLETLTVTNNTQN
HHHHHHHCCCCCCCCCCCCCEEEEECEEECCCCCCCEEEEECCCCCCCCEEEEEECCCCC
LSPEHTKSYEVGGKWDLLNDNLSVTSALFQQEKSNARTQTSTGEYLLEGDIRVRGFQASV
CCCCCCCCEECCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEEEE
TGHITPKWQVFGSYTYMNGTILSARDGTQGKTLANTPRNTFTLWTTYAFTPHWEIGGGPT
EECCCCCEEEEEEEEEECCEEEECCCCCCCCEECCCCCCEEEEEEEEEECCCEECCCCCC
YMSGRYAANTNYVQVGGYTRWDATAAYHAKRWDLRLNVLNLTDKFYYDALIQSDGGRAVP
CCCCEEECCCCEEEECCEEECCCHHHHEEEEEEEEEEEEECCHHHHEEHEEECCCCCCCC
GIGRTFLATLDYRF
CCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12910271; 10079522 [H]