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The map label for this gene is yqhC [H]

Identifier: 189353513

GI number: 189353513

Start: 1735247

End: 1736209

Strand: Reverse

Name: yqhC [H]

Synonym: BMULJ_04757

Alternate gene names: 189353513

Gene position: 1736209-1735247 (Counterclockwise)

Preceding gene: 189353521

Following gene: 189353502

Centisome position: 70.2

GC content: 70.2

Gene sequence:

>963_bases
ATGCTCGCGCGACAGGGAAACCGATTCGAGGATCTCGTGATGGACATGACCGACATCGCCGCGTCGCGCGCGGCCGGGCA
GCGCGAACTGGCGTCGCTGATCGGCCGCTTCGCGCCGGTGGACGGCTCGCACGCGACCGCGGTGCCGGGCCTGATGCTGC
ACAAGCACGTGCGGCCCGTCGATCTCGGCTGCGCCGTGTCGCGCGCGGCGCTCGTGATCGCCGCGCAGGGCGCGAAGCGC
GTGATCGTGGCCGGCCACGCGTACGAATACGATGCACAAAACTGCCTGATTACGTCGATCGACTTGCCGATCCTGTCGCG
CGTGACGCGCGCGTCGGCCGACGCGCCGTACCTCTGCCTGTCGCTGACGCTCGATCCGCAGCGGATCGTCGAGCTCGCGG
CCGAGATGCGGTTGCCGGAGCCGGAGTCCGGCCCGGAGGGCGAGGGGATCGCGCTCGCCGAGCTGACGACGCCGCTGCTC
GATGCCGCGCTGCGGCTCGTGCGGCTGCTCGACACGCCGGCCGACATTCCGGTGCTCGCGCCGCTGATCGAGAAGGAGAT
GCTGTACCGGCTGCTGACGAGCGCGCAGGGCACGCGGCTGCGGCACATGGCCGTCGCCGGCAGCCAGACGCACCGGATCG
CGCGCGCGATCGAATGGATCCGTGCGCACTTCGCGGAGCCGATGCGTGTCGAGACGCTCGCGAACGCGGTCAACATGAGC
GTGTCGTCGCTGCATCATCATTTCAAGCACGTGACGACGCTGAGCCCGCTGCAGTACCAGAAACAGTTGCGGCTGCACGA
GGCGCGCCGACTGCTGTTGCAGCAGGGCGGCGACGTCGGCTCGGTCGCCGCGAGCGTCGGCTACGAGAGCGCGTCGCAGT
TCAGCCGCGAGTACAGCCGGCTGTTCGGCGCGCCGCCGATGCGCGATGTCGCGCACTTGCGGCGGCGCGAGCTGCTTGGC
TGA

Upstream 100 bases:

>100_bases
GCCGGCAGTGTGCGCGAGCTGCCGCCGTTTTCGTCTACCCAATCCTGCAAATTTCTTGAACAATCCTGCAAATCCCGCGC
ACGACGACAGACGTTTCGCT

Downstream 100 bases:

>100_bases
GGCGCGACGACGCGGCCGCGCTCAGAGATGGCAGACACCGTTCACATAGACCTTGCGCCAGCGGACGATGGCGATTCGCT
CGAATAGCCCCGCGAGCGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MLARQGNRFEDLVMDMTDIAASRAAGQRELASLIGRFAPVDGSHATAVPGLMLHKHVRPVDLGCAVSRAALVIAAQGAKR
VIVAGHAYEYDAQNCLITSIDLPILSRVTRASADAPYLCLSLTLDPQRIVELAAEMRLPEPESGPEGEGIALAELTTPLL
DAALRLVRLLDTPADIPVLAPLIEKEMLYRLLTSAQGTRLRHMAVAGSQTHRIARAIEWIRAHFAEPMRVETLANAVNMS
VSSLHHHFKHVTTLSPLQYQKQLRLHEARRLLLQQGGDVGSVAASVGYESASQFSREYSRLFGAPPMRDVAHLRRRELLG

Sequences:

>Translated_320_residues
MLARQGNRFEDLVMDMTDIAASRAAGQRELASLIGRFAPVDGSHATAVPGLMLHKHVRPVDLGCAVSRAALVIAAQGAKR
VIVAGHAYEYDAQNCLITSIDLPILSRVTRASADAPYLCLSLTLDPQRIVELAAEMRLPEPESGPEGEGIALAELTTPLL
DAALRLVRLLDTPADIPVLAPLIEKEMLYRLLTSAQGTRLRHMAVAGSQTHRIARAIEWIRAHFAEPMRVETLANAVNMS
VSSLHHHFKHVTTLSPLQYQKQLRLHEARRLLLQQGGDVGSVAASVGYESASQFSREYSRLFGAPPMRDVAHLRRRELLG
>Mature_320_residues
MLARQGNRFEDLVMDMTDIAASRAAGQRELASLIGRFAPVDGSHATAVPGLMLHKHVRPVDLGCAVSRAALVIAAQGAKR
VIVAGHAYEYDAQNCLITSIDLPILSRVTRASADAPYLCLSLTLDPQRIVELAAEMRLPEPESGPEGEGIALAELTTPLL
DAALRLVRLLDTPADIPVLAPLIEKEMLYRLLTSAQGTRLRHMAVAGSQTHRIARAIEWIRAHFAEPMRVETLANAVNMS
VSSLHHHFKHVTTLSPLQYQKQLRLHEARRLLLQQGGDVGSVAASVGYESASQFSREYSRLFGAPPMRDVAHLRRRELLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=290, Percent_Identity=34.4827586206897, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34998; Mature: 34998

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLARQGNRFEDLVMDMTDIAASRAAGQRELASLIGRFAPVDGSHATAVPGLMLHKHVRPV
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHCCHHHHHHCCCCC
DLGCAVSRAALVIAAQGAKRVIVAGHAYEYDAQNCLITSIDLPILSRVTRASADAPYLCL
CHHHHHHHHHHEEEECCCCEEEEECCCEEECCCCEEEEECCHHHHHHHHHCCCCCCEEEE
SLTLDPQRIVELAAEMRLPEPESGPEGEGIALAELTTPLLDAALRLVRLLDTPADIPVLA
EEECCHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
PLIEKEMLYRLLTSAQGTRLRHMAVAGSQTHRIARAIEWIRAHFAEPMRVETLANAVNMS
HHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VSSLHHHFKHVTTLSPLQYQKQLRLHEARRLLLQQGGDVGSVAASVGYESASQFSREYSR
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHH
LFGAPPMRDVAHLRRRELLG
HHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLARQGNRFEDLVMDMTDIAASRAAGQRELASLIGRFAPVDGSHATAVPGLMLHKHVRPV
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHCCHHHHHHCCCCC
DLGCAVSRAALVIAAQGAKRVIVAGHAYEYDAQNCLITSIDLPILSRVTRASADAPYLCL
CHHHHHHHHHHEEEECCCCEEEEECCCEEECCCCEEEEECCHHHHHHHHHCCCCCCEEEE
SLTLDPQRIVELAAEMRLPEPESGPEGEGIALAELTTPLLDAALRLVRLLDTPADIPVLA
EEECCHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
PLIEKEMLYRLLTSAQGTRLRHMAVAGSQTHRIARAIEWIRAHFAEPMRVETLANAVNMS
HHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VSSLHHHFKHVTTLSPLQYQKQLRLHEARRLLLQQGGDVGSVAASVGYESASQFSREYSR
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHH
LFGAPPMRDVAHLRRRELLG
HHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]