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The map label for this gene is ybcK [H]

Identifier: 189353371

GI number: 189353371

Start: 1620691

End: 1622250

Strand: Direct

Name: ybcK [H]

Synonym: BMULJ_04612

Alternate gene names: 189353371

Gene position: 1620691-1622250 (Clockwise)

Preceding gene: 189353369

Following gene: 189353413

Centisome position: 65.53

GC content: 60.83

Gene sequence:

>1560_bases
ATGCAGCTCGACGCTACGCTGACGTTACGCGACGAAGGACTGTCTGCATTCCACCAGCGCCACATCAAGCAGGGGGCACT
CGGCGTATTCCTGCGCGCGATCGAGGACGGACGCATTCAACCCGGCTCCGTGCTAATCGTCGAAGGACTTGACCGCCTGA
GCCGTGCAGAGCCAATTCAGGCTCAGGCACAGCTTGCGCAGATCATCAACGCCGGCATCACAGTTGTAACAGCAAGCGAT
GGTCGCGAGTACAACCGTGAGCGACTGAAAGCACAGCCGATGGATCTCGTGTACAGCCTACTCGTAATGATCCGGGCGCA
TGAAGAATCAGACACGAAAAGCAAGCGCGTGAAAGCAGCAATTCGGCGGCAATGCGAGGGGTGGGTTGCAGGAACATGGC
GCGGGATCATTCGCAACGGAAAGGACCCGCACTGGGTGCGGCTTGGCGAGCATGGGAAGTTCGAGCATGTGCCCGAGCGC
GTGCTCGCGGTTCGGACGATGATCGATCTGTTCCTCGAGGGGCATGGGGCCATCGAGATCACCCGACGCTTAACGGAGCA
GAACCTCTACGTCAGCAACGCCGGGAACTATTCCGTGCATATGTACCGCATCGTGCGCAACCAGGCACTGATCGGCGAGA
AACGGATCTCTGTCGACGGCGAAGAATTCCGGCTCGATGGTTACTACCCACCGATCCTCACCCGCGAAGAGTTTGCCGAA
CTGCAGCAGACGATGAGCGAGCGCGGCCGCCGGAAGGGGAAGGGTGAAATCCCGAACATCATCACCGGGCTATCAATCAC
GGTGTGCGGGTACTGCGGGCGCGCGATGACTACGCAGAATTCCAAGGCACGGGCACCGAAAGGAAAGAGCGTCGTACGGC
GCCTGTCGTGCCCGATGAACAGCTTCAATGAAGGATGCCCGATCGGCGGAAGTTGTGAATCGGAAATTGTGGAGCGCGCG
CTCATGCGCTACTGCTCTGATCAGTTCAATCTATCGCGCCTTCTGGAGGGTGACGATGGAACCGCGCGCCGGACGGCTCA
GCTCGCTGTCGCTAGACAGCGAGCATCGGACATCGAAGCGCAGATCCAGCGCGTCACGGACGCCCTGCTTTCAGACGATG
GAAAGGCGCCGGCAGCATTCACACGGCGCGCTCGAGAACTGGAAACGCAACTCGAAGAGCAGCGCCGCGAGATCGAGGCT
CTCGAACACCAGATTGCGGCAAGCAGCGCCCATGGGATACCGGCTGCGGCAGAGGCGTGGGCGCAGCTCGTCGACGGCGT
CTTGGCGCTCGACTACGACGCGCGCATGAAAGCGCGTCAGCTCGTCGCGGACACGTTCCGGAAGATCGTCGTTTATCAGC
GTGGGTTCGCCCCTATTGACGACGCCGCCGCTGATCGCTGGAAACGCAGCGGAACAATCGGCCTCATGCTCGTAACGAAG
CGCGGCGGAATGCGACTTCTGAACGTCGATCGGCGAACTGGATGCTGGCAAGCCGAGGATGACCTCGATCCCTCGCTCAT
CCCAAGCGACGGGCTGCCGATGCTTCCTCTCGACGCCTGA

Upstream 100 bases:

>100_bases
GGTCTACAGCTATCTACGCTTCTCCGATCCGAAGCAGGCCGCTGGCAGCAGTGCGGATCGGCAAATGGAATACGCGGCGC
GATGGGCGACCGAGCACGAC

Downstream 100 bases:

>100_bases
TACTCTCGCCTAGGCGGGTCGTTCGACCAAGCTGGTTCGCCAGTCGCCAACGAACCCGAAGGTAGGTGCTGGCTTCGATT
CCGAAAACCAGAAATCCGTG

Product: bacteriophage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 519; Mature: 519

Protein sequence:

>519_residues
MQLDATLTLRDEGLSAFHQRHIKQGALGVFLRAIEDGRIQPGSVLIVEGLDRLSRAEPIQAQAQLAQIINAGITVVTASD
GREYNRERLKAQPMDLVYSLLVMIRAHEESDTKSKRVKAAIRRQCEGWVAGTWRGIIRNGKDPHWVRLGEHGKFEHVPER
VLAVRTMIDLFLEGHGAIEITRRLTEQNLYVSNAGNYSVHMYRIVRNQALIGEKRISVDGEEFRLDGYYPPILTREEFAE
LQQTMSERGRRKGKGEIPNIITGLSITVCGYCGRAMTTQNSKARAPKGKSVVRRLSCPMNSFNEGCPIGGSCESEIVERA
LMRYCSDQFNLSRLLEGDDGTARRTAQLAVARQRASDIEAQIQRVTDALLSDDGKAPAAFTRRARELETQLEEQRREIEA
LEHQIAASSAHGIPAAAEAWAQLVDGVLALDYDARMKARQLVADTFRKIVVYQRGFAPIDDAAADRWKRSGTIGLMLVTK
RGGMRLLNVDRRTGCWQAEDDLDPSLIPSDGLPMLPLDA

Sequences:

>Translated_519_residues
MQLDATLTLRDEGLSAFHQRHIKQGALGVFLRAIEDGRIQPGSVLIVEGLDRLSRAEPIQAQAQLAQIINAGITVVTASD
GREYNRERLKAQPMDLVYSLLVMIRAHEESDTKSKRVKAAIRRQCEGWVAGTWRGIIRNGKDPHWVRLGEHGKFEHVPER
VLAVRTMIDLFLEGHGAIEITRRLTEQNLYVSNAGNYSVHMYRIVRNQALIGEKRISVDGEEFRLDGYYPPILTREEFAE
LQQTMSERGRRKGKGEIPNIITGLSITVCGYCGRAMTTQNSKARAPKGKSVVRRLSCPMNSFNEGCPIGGSCESEIVERA
LMRYCSDQFNLSRLLEGDDGTARRTAQLAVARQRASDIEAQIQRVTDALLSDDGKAPAAFTRRARELETQLEEQRREIEA
LEHQIAASSAHGIPAAAEAWAQLVDGVLALDYDARMKARQLVADTFRKIVVYQRGFAPIDDAAADRWKRSGTIGLMLVTK
RGGMRLLNVDRRTGCWQAEDDLDPSLIPSDGLPMLPLDA
>Mature_519_residues
MQLDATLTLRDEGLSAFHQRHIKQGALGVFLRAIEDGRIQPGSVLIVEGLDRLSRAEPIQAQAQLAQIINAGITVVTASD
GREYNRERLKAQPMDLVYSLLVMIRAHEESDTKSKRVKAAIRRQCEGWVAGTWRGIIRNGKDPHWVRLGEHGKFEHVPER
VLAVRTMIDLFLEGHGAIEITRRLTEQNLYVSNAGNYSVHMYRIVRNQALIGEKRISVDGEEFRLDGYYPPILTREEFAE
LQQTMSERGRRKGKGEIPNIITGLSITVCGYCGRAMTTQNSKARAPKGKSVVRRLSCPMNSFNEGCPIGGSCESEIVERA
LMRYCSDQFNLSRLLEGDDGTARRTAQLAVARQRASDIEAQIQRVTDALLSDDGKAPAAFTRRARELETQLEEQRREIEA
LEHQIAASSAHGIPAAAEAWAQLVDGVLALDYDARMKARQLVADTFRKIVVYQRGFAPIDDAAADRWKRSGTIGLMLVTK
RGGMRLLNVDRRTGCWQAEDDLDPSLIPSDGLPMLPLDA

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786756, Length=463, Percent_Identity=26.7818574514039, Blast_Score=121, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 57893; Mature: 57893

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLDATLTLRDEGLSAFHQRHIKQGALGVFLRAIEDGRIQPGSVLIVEGLDRLSRAEPIQ
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCHH
AQAQLAQIINAGITVVTASDGREYNRERLKAQPMDLVYSLLVMIRAHEESDTKSKRVKAA
HHHHHHHHHHCCEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IRRQCEGWVAGTWRGIIRNGKDPHWVRLGEHGKFEHVPERVLAVRTMIDLFLEGHGAIEI
HHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH
TRRLTEQNLYVSNAGNYSVHMYRIVRNQALIGEKRISVDGEEFRLDGYYPPILTREEFAE
HHHHHHCCEEEECCCCCEEEEEHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCHHHHHH
LQQTMSERGRRKGKGEIPNIITGLSITVCGYCGRAMTTQNSKARAPKGKSVVRRLSCPMN
HHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
SFNEGCPIGGSCESEIVERALMRYCSDQFNLSRLLEGDDGTARRTAQLAVARQRASDIEA
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
QIQRVTDALLSDDGKAPAAFTRRARELETQLEEQRREIEALEHQIAASSAHGIPAAAEAW
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
AQLVDGVLALDYDARMKARQLVADTFRKIVVYQRGFAPIDDAAADRWKRSGTIGLMLVTK
HHHHCCHHEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEC
RGGMRLLNVDRRTGCWQAEDDLDPSLIPSDGLPMLPLDA
CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQLDATLTLRDEGLSAFHQRHIKQGALGVFLRAIEDGRIQPGSVLIVEGLDRLSRAEPIQ
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCHH
AQAQLAQIINAGITVVTASDGREYNRERLKAQPMDLVYSLLVMIRAHEESDTKSKRVKAA
HHHHHHHHHHCCEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IRRQCEGWVAGTWRGIIRNGKDPHWVRLGEHGKFEHVPERVLAVRTMIDLFLEGHGAIEI
HHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH
TRRLTEQNLYVSNAGNYSVHMYRIVRNQALIGEKRISVDGEEFRLDGYYPPILTREEFAE
HHHHHHCCEEEECCCCCEEEEEHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCHHHHHH
LQQTMSERGRRKGKGEIPNIITGLSITVCGYCGRAMTTQNSKARAPKGKSVVRRLSCPMN
HHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
SFNEGCPIGGSCESEIVERALMRYCSDQFNLSRLLEGDDGTARRTAQLAVARQRASDIEA
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
QIQRVTDALLSDDGKAPAAFTRRARELETQLEEQRREIEALEHQIAASSAHGIPAAAEAW
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
AQLVDGVLALDYDARMKARQLVADTFRKIVVYQRGFAPIDDAAADRWKRSGTIGLMLVTK
HHHHCCHHEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEC
RGGMRLLNVDRRTGCWQAEDDLDPSLIPSDGLPMLPLDA
CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]