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The map label for this gene is ykgD [C]

Identifier: 189353304

GI number: 189353304

Start: 1542572

End: 1543540

Strand: Reverse

Name: ykgD [C]

Synonym: BMULJ_04544

Alternate gene names: 189353304

Gene position: 1543540-1542572 (Counterclockwise)

Preceding gene: 189353305

Following gene: 189353303

Centisome position: 62.41

GC content: 67.7

Gene sequence:

>969_bases
ATGTCCGACATCGACTGGCTGAGCCATCTTCTGCAAATGATCACCGTCACCGGCCGGGTGGAGGTCCGCTGCGTGTACGG
TGCGCCGTGGCAGGTCGCGTGGGATCGATCGGCCGCACACGTGATTCCGTACCACGTCGTGCTCGAGGGGCGTGCCGTGC
TCGAGGATACCGAGTCCGGGACGGTCAGGGAGCTGGCGAGCGGCGACATCGTGCTGCTGCCGCACGGTGCCGCGCACGTG
CTGCACGATGGCAGCGGCCATACGCCGGGCCGCACGCATAATCGCGCGGGTTTCGCCGGATGGATGCTCAGCGAGAACGA
CGGTCGCGGCGAACGCCTGGACATGCTGTGCGGACGCTTCTTCATCCGGCCGCCGCATGATCGGCTGATTCGCGACTACC
TGCCGACGACACTGACCGTGCGCTCCGCGGATGGCGGCGACGACGACGGCAACGGTAGCGGGAACGGCTCTGCGTCGAAC
CAGCTCGCCAGTCTCGTCGCGTTGATGCGCATGGAGTCGGCCGGCGAGAAGCCGGGCGGATACGCGATCCTCAATGCCCT
GACTTCGGCGCTGTTCACGCTCGTGCTGCGCGCGGCGAGCGAATCGGGGCAGGCGCCGGCGGGATTGCTCGCGCTGGCCG
GTCATCCGCGGCTGGCGCCGGCGATTTCGGCAATGTTCGCCGACCCCGCGCGACCGTGGAGCCTGCCCGAGCTGGCCGCC
CTCTGCAACATGTCGCGCGCAACCTTCATGCGGCACTTTCAGGACAAACTCGGCCGCTCGGCCACGGACCTGCTCACGGA
CATCCGGATGACACTGGCCGCAAACGAGCTGAAGAAGCCGACGATGAGCACCGAGGCCGTGGCCGAGGCGATCGGCTATC
GGTCGGTCGCGGCATTCCGGCGTGTGTTCACCGACAAGATGGGGATGACGCCCGGACAATGGCGCCGTCTCGCGAACGAA
GGCGACTAG

Upstream 100 bases:

>100_bases
CGTTCGCGTGCCGTCGAAGGCGCTATCGCACGCGCGTACGGTCGCGCGAAACCGCCATAAAATGCCCGAACCGCGCAAAC
GCTTCCGGTTTTGAAATTCC

Downstream 100 bases:

>100_bases
CGCGCCTTGCACGCGACACATGGCGTCGAATGGACCGTGCCGGCGTTTGATCCTTTCGGGCATGTTGTTGAGCCCACGCA
GTCTCGAAATCCGTAATGGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MSDIDWLSHLLQMITVTGRVEVRCVYGAPWQVAWDRSAAHVIPYHVVLEGRAVLEDTESGTVRELASGDIVLLPHGAAHV
LHDGSGHTPGRTHNRAGFAGWMLSENDGRGERLDMLCGRFFIRPPHDRLIRDYLPTTLTVRSADGGDDDGNGSGNGSASN
QLASLVALMRMESAGEKPGGYAILNALTSALFTLVLRAASESGQAPAGLLALAGHPRLAPAISAMFADPARPWSLPELAA
LCNMSRATFMRHFQDKLGRSATDLLTDIRMTLAANELKKPTMSTEAVAEAIGYRSVAAFRRVFTDKMGMTPGQWRRLANE
GD

Sequences:

>Translated_322_residues
MSDIDWLSHLLQMITVTGRVEVRCVYGAPWQVAWDRSAAHVIPYHVVLEGRAVLEDTESGTVRELASGDIVLLPHGAAHV
LHDGSGHTPGRTHNRAGFAGWMLSENDGRGERLDMLCGRFFIRPPHDRLIRDYLPTTLTVRSADGGDDDGNGSGNGSASN
QLASLVALMRMESAGEKPGGYAILNALTSALFTLVLRAASESGQAPAGLLALAGHPRLAPAISAMFADPARPWSLPELAA
LCNMSRATFMRHFQDKLGRSATDLLTDIRMTLAANELKKPTMSTEAVAEAIGYRSVAAFRRVFTDKMGMTPGQWRRLANE
GD
>Mature_321_residues
SDIDWLSHLLQMITVTGRVEVRCVYGAPWQVAWDRSAAHVIPYHVVLEGRAVLEDTESGTVRELASGDIVLLPHGAAHVL
HDGSGHTPGRTHNRAGFAGWMLSENDGRGERLDMLCGRFFIRPPHDRLIRDYLPTTLTVRSADGGDDDGNGSGNGSASNQ
LASLVALMRMESAGEKPGGYAILNALTSALFTLVLRAASESGQAPAGLLALAGHPRLAPAISAMFADPARPWSLPELAAL
CNMSRATFMRHFQDKLGRSATDLLTDIRMTLAANELKKPTMSTEAVAEAIGYRSVAAFRRVFTDKMGMTPGQWRRLANEG
D

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=313, Percent_Identity=28.4345047923323, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34755; Mature: 34624

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIDWLSHLLQMITVTGRVEVRCVYGAPWQVAWDRSAAHVIPYHVVLEGRAVLEDTESG
CCHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCEEEEEEEEEECCHHCCCCCCC
TVRELASGDIVLLPHGAAHVLHDGSGHTPGRTHNRAGFAGWMLSENDGRGERLDMLCGRF
HHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
FIRPPHDRLIRDYLPTTLTVRSADGGDDDGNGSGNGSASNQLASLVALMRMESAGEKPGG
CCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
YAILNALTSALFTLVLRAASESGQAPAGLLALAGHPRLAPAISAMFADPARPWSLPELAA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHH
LCNMSRATFMRHFQDKLGRSATDLLTDIRMTLAANELKKPTMSTEAVAEAIGYRSVAAFR
HHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
RVFTDKMGMTPGQWRRLANEGD
HHHHHHCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
SDIDWLSHLLQMITVTGRVEVRCVYGAPWQVAWDRSAAHVIPYHVVLEGRAVLEDTESG
CHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCEEEEEEEEEECCHHCCCCCCC
TVRELASGDIVLLPHGAAHVLHDGSGHTPGRTHNRAGFAGWMLSENDGRGERLDMLCGRF
HHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
FIRPPHDRLIRDYLPTTLTVRSADGGDDDGNGSGNGSASNQLASLVALMRMESAGEKPGG
CCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
YAILNALTSALFTLVLRAASESGQAPAGLLALAGHPRLAPAISAMFADPARPWSLPELAA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHH
LCNMSRATFMRHFQDKLGRSATDLLTDIRMTLAANELKKPTMSTEAVAEAIGYRSVAAFR
HHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
RVFTDKMGMTPGQWRRLANEGD
HHHHHHCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]