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The map label for this gene is sepC [H]

Identifier: 189352958

GI number: 189352958

Start: 1113388

End: 1114896

Strand: Reverse

Name: sepC [H]

Synonym: BMULJ_04192

Alternate gene names: 189352958

Gene position: 1114896-1113388 (Counterclockwise)

Preceding gene: 189352959

Following gene: 189352957

Centisome position: 45.08

GC content: 73.43

Gene sequence:

>1509_bases
GTGATCGCGACCGGCCCGCGCCGCGCCGTCGCCGCCTGCGCGATCGCGGCGGCAGCCGCCCTCGCCGGCTGCACGGTCGG
CCCCGACTACCGGCGGCCCGCGGTCGACACGCCGGCCGCGTGGCACGTCGATCCGGCCGACGCGTACTGGCATCCGGCCG
CGCCGGCGCGCGCGCCGCTCGACGCGACCTGGTGGACCGCATTCGGCGATCCGCAGCTCGACGCGCTCGAAGCCGAGGCG
CAGCGCAACAACCAGAACCTCAAGGCCGTCGCCGCGCGCTACGACCAGGCGAAGGCGACGCTCGCGTCGGTCGCGTCGGC
GCAATATCCGGCCGTCTCGCTGAACGCCAGCGGCCAGCGCTTTCGCATCTCGGCCGACCGGCCGCAGACGAACTACGCGA
CGCAGAACGTATCGACCGTGCAGAACGACATCCAGGTCGGCGCGAGCGTCAGCTACGAGCTCGACCTGTTCGGCCGCGTG
CGGCGCACGGTCGAGGCCGCCGAGGCGAATACCGACCAGGCGCGCGACGACTTCGCGAACGCGCGCGTCGTGCTGAGCGC
CGATCTCGCGTCGAGCTATTTCGCGCTGCGCGAGCTCGACGCGGAGATCGACGTCGTGCAGCGCTCGATCGCGCTGCAGC
AGAAGGCGCTCGACTATGTGAGCGCGCGCCACGATCTCGGTGCGGTGTCGGGCCTCGACCTGCTGCAGCAGCGCGCGCAG
CTCGACGCGACGCGCACGCAGGCGCAGTTGCTGGTGCGGCAGCGCGCGCAGGTCGAAACCGCGATCGCGACGCTCGTCGG
CACGCCGGCGCCCGCATTCTCGCTGCCGCCGCGCGTGGTGCCGATCAACGCGCCGGCGCTGCCGACCGGCATCCCGAGCG
ATCTGCTGCAGCGGCGCCCGGACGTCGCGTCGGCCGAGCGCGCGATGGCTGCCGCGAACGCGCAGATCGGCATCGCGCGC
GCCGCGTATTTTCCGCGCATCGCGCTGTCGCCCGACATCGGCTGGGACGCGACGCGCTTCTCCGGTCTGTTCACGGTGCC
GGCGCTGCTGTGGTCGATCGGCGCGTCGGCGAGCGAGTCGCTGTTCGCGGGCGGCAAGCTGCAGGCCGGCGTCGATTTCG
CGCAGGCCGGCTACGTGGCCGCGCAGGCCAACTATCGGCAGACGGTGCTCACCGCGTTCGAGGAGGTGCAAAATGCGGTG
ACCGGGCTGTCGGTGCTCGCCGATGCGGCGCAGCAGGCGTCCGCCGCCGTCGACGACGCGCGCCGGCTCGTGTCGCTCGC
GCAGGACCGCTACGCGGGCGGGCTCGCGCCCTTCATCGACGTGCTGACGGCCGAACAGCAGTTGCTGACGAGCGAGCGAC
AGGCCGTGCAGATCCAGGGGCAGCGCGCGGCGCTCGTGGTCTTTCTCGCGAAGGCGCTCGGCGGCGGCTGGAACGGCGCG
GCCCCGACCTCCTCCGACATGGCGGCCGCGGACGCCGCCGGCACGCGCCCGTCGGCGGTCACGCGATAA

Upstream 100 bases:

>100_bases
GGCTCGTCGCGAACCCCGGCGATGCGCTCGCGAACGGCGACACGGTCGTCGTGTCGACGCCGACCGCGCAACCTGCGTCG
GCCGCCGCAGGAGCCCGATC

Downstream 100 bases:

>100_bases
CGGATCCGAACATGAAAGTACTGATCATCGAAGACGAACCGAAAGTCGTCGAATATCTGAAGAGCGGACTGACCGAGGAA
GGCTGGGTCGTCGATACCGC

Product: RND efflux system outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MIATGPRRAVAACAIAAAAALAGCTVGPDYRRPAVDTPAAWHVDPADAYWHPAAPARAPLDATWWTAFGDPQLDALEAEA
QRNNQNLKAVAARYDQAKATLASVASAQYPAVSLNASGQRFRISADRPQTNYATQNVSTVQNDIQVGASVSYELDLFGRV
RRTVEAAEANTDQARDDFANARVVLSADLASSYFALRELDAEIDVVQRSIALQQKALDYVSARHDLGAVSGLDLLQQRAQ
LDATRTQAQLLVRQRAQVETAIATLVGTPAPAFSLPPRVVPINAPALPTGIPSDLLQRRPDVASAERAMAAANAQIGIAR
AAYFPRIALSPDIGWDATRFSGLFTVPALLWSIGASASESLFAGGKLQAGVDFAQAGYVAAQANYRQTVLTAFEEVQNAV
TGLSVLADAAQQASAAVDDARRLVSLAQDRYAGGLAPFIDVLTAEQQLLTSERQAVQIQGQRAALVVFLAKALGGGWNGA
APTSSDMAAADAAGTRPSAVTR

Sequences:

>Translated_502_residues
MIATGPRRAVAACAIAAAAALAGCTVGPDYRRPAVDTPAAWHVDPADAYWHPAAPARAPLDATWWTAFGDPQLDALEAEA
QRNNQNLKAVAARYDQAKATLASVASAQYPAVSLNASGQRFRISADRPQTNYATQNVSTVQNDIQVGASVSYELDLFGRV
RRTVEAAEANTDQARDDFANARVVLSADLASSYFALRELDAEIDVVQRSIALQQKALDYVSARHDLGAVSGLDLLQQRAQ
LDATRTQAQLLVRQRAQVETAIATLVGTPAPAFSLPPRVVPINAPALPTGIPSDLLQRRPDVASAERAMAAANAQIGIAR
AAYFPRIALSPDIGWDATRFSGLFTVPALLWSIGASASESLFAGGKLQAGVDFAQAGYVAAQANYRQTVLTAFEEVQNAV
TGLSVLADAAQQASAAVDDARRLVSLAQDRYAGGLAPFIDVLTAEQQLLTSERQAVQIQGQRAALVVFLAKALGGGWNGA
APTSSDMAAADAAGTRPSAVTR
>Mature_502_residues
MIATGPRRAVAACAIAAAAALAGCTVGPDYRRPAVDTPAAWHVDPADAYWHPAAPARAPLDATWWTAFGDPQLDALEAEA
QRNNQNLKAVAARYDQAKATLASVASAQYPAVSLNASGQRFRISADRPQTNYATQNVSTVQNDIQVGASVSYELDLFGRV
RRTVEAAEANTDQARDDFANARVVLSADLASSYFALRELDAEIDVVQRSIALQQKALDYVSARHDLGAVSGLDLLQQRAQ
LDATRTQAQLLVRQRAQVETAIATLVGTPAPAFSLPPRVVPINAPALPTGIPSDLLQRRPDVASAERAMAAANAQIGIAR
AAYFPRIALSPDIGWDATRFSGLFTVPALLWSIGASASESLFAGGKLQAGVDFAQAGYVAAQANYRQTVLTAFEEVQNAV
TGLSVLADAAQQASAAVDDARRLVSLAQDRYAGGLAPFIDVLTAEQQLLTSERQAVQIQGQRAALVVFLAKALGGGWNGA
APTSSDMAAADAAGTRPSAVTR

Specific function: Probable outer membrane component of the sepABC efflux pump with unknown specificity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=490, Percent_Identity=28.5714285714286, Blast_Score=172, Evalue=5e-44,
Organism=Escherichia coli, GI2367348, Length=430, Percent_Identity=24.4186046511628, Blast_Score=100, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 52767; Mature: 52767

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIATGPRRAVAACAIAAAAALAGCTVGPDYRRPAVDTPAAWHVDPADAYWHPAAPARAPL
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DATWWTAFGDPQLDALEAEAQRNNQNLKAVAARYDQAKATLASVASAQYPAVSLNASGQR
CCCEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCE
FRISADRPQTNYATQNVSTVQNDIQVGASVSYELDLFGRVRRTVEAAEANTDQARDDFAN
EEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHCC
ARVVLSADLASSYFALRELDAEIDVVQRSIALQQKALDYVSARHDLGAVSGLDLLQQRAQ
CEEEEEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LDATRTQAQLLVRQRAQVETAIATLVGTPAPAFSLPPRVVPINAPALPTGIPSDLLQRRP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHCCC
DVASAERAMAAANAQIGIARAAYFPRIALSPDIGWDATRFSGLFTVPALLWSIGASASES
CHHHHHHHHHHHCCCHHHHHHHHCCCEEECCCCCCCHHHHCHHHHHHHHHHHHCCCCCCH
LFAGGKLQAGVDFAQAGYVAAQANYRQTVLTAFEEVQNAVTGLSVLADAAQQASAAVDDA
HHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRLVSLAQDRYAGGLAPFIDVLTAEQQLLTSERQAVQIQGQRAALVVFLAKALGGGWNGA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHCCCCCCC
APTSSDMAAADAAGTRPSAVTR
CCCCCCHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MIATGPRRAVAACAIAAAAALAGCTVGPDYRRPAVDTPAAWHVDPADAYWHPAAPARAPL
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DATWWTAFGDPQLDALEAEAQRNNQNLKAVAARYDQAKATLASVASAQYPAVSLNASGQR
CCCEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCE
FRISADRPQTNYATQNVSTVQNDIQVGASVSYELDLFGRVRRTVEAAEANTDQARDDFAN
EEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHCC
ARVVLSADLASSYFALRELDAEIDVVQRSIALQQKALDYVSARHDLGAVSGLDLLQQRAQ
CEEEEEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LDATRTQAQLLVRQRAQVETAIATLVGTPAPAFSLPPRVVPINAPALPTGIPSDLLQRRP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHCCC
DVASAERAMAAANAQIGIARAAYFPRIALSPDIGWDATRFSGLFTVPALLWSIGASASES
CHHHHHHHHHHHCCCHHHHHHHHCCCEEECCCCCCCHHHHCHHHHHHHHHHHHCCCCCCH
LFAGGKLQAGVDFAQAGYVAAQANYRQTVLTAFEEVQNAVTGLSVLADAAQQASAAVDDA
HHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRLVSLAQDRYAGGLAPFIDVLTAEQQLLTSERQAVQIQGQRAALVVFLAKALGGGWNGA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHCCCCCCC
APTSSDMAAADAAGTRPSAVTR
CCCCCCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9037074 [H]