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The map label for this gene is tctD [H]

Identifier: 189352929

GI number: 189352929

Start: 1082198

End: 1082872

Strand: Direct

Name: tctD [H]

Synonym: BMULJ_04163

Alternate gene names: 189352929

Gene position: 1082198-1082872 (Clockwise)

Preceding gene: 189352928

Following gene: 189352930

Centisome position: 43.76

GC content: 68.89

Gene sequence:

>675_bases
ATGCGTGTGCTGCTCGTCGAAGACAACCCCCTCCTTGCGCAGTCGCTCAACGACGCGCTGAGTGCCGCGCGGTTCGCGGT
CGACCACATGGCGGACGGCGAGGCGGCGGACCACGTGCTGCGCACGCAGGATTACGCGCTGGTGATCCTCGATCTCGGGC
TGCCGAAGCTCGACGGGCTCGAGGTGCTGCGGCGGCTGCGCGCACGCCGCAATCCGGTGCCGGTGCTGATCCTCACGGCG
CACGGCTCGGTCGAGGATCGCGTGAAGGGTCTCGACCTCGGCGCCGACGACTATCTCGCGAAGCCGTTCGAGCTGACCGA
GCTCGAGGCGCGCGCCCGCGCGCTGATCCGGCGCAGCCTCGGCCACGAGCATTCGCGCGTCGAATGCGGGCCGCTCGCCT
ACGACAGCGTCGATCGCAGCTTCCGGCTCGCCGGCGAGCCGCTGCCGCTCACGCCGCGCGAGCGCTCGGTGCTCGAGGTG
CTGATCCTGCGCAACGGCCGCGCGATCAACAAGGAAACGCTATCGGAGAAGATCTTCGGCCTCGACGAATCCGTCAACGC
CGACGCGATCGAGATCTACGTGTACCGGCTGCGCAAGAAGCTCGAGAACAGCGGCGTCGCGATCGTCACGCTGCGCGGGC
TCGGCTATCTGCTCGAAGCGAAGGCCGACGCGTGA

Upstream 100 bases:

>100_bases
CGCGAACGCACACGACCGCGCAACCGGGGTTTGTGCGAGGCGTCGGCGCGGAAAGGATCATGTAATGTAGCGGCCTGACT
TTTGCCTGACCGGAATCGCC

Downstream 100 bases:

>100_bases
AGCAGCCGAACCTGCGGGCGCAGGTCGCGCTGTGGTTGCTGCTGCCGCTGCTCGGCCTGCTCGCCTTCGATTCCTGGCTC
ACCTACCAGCGCGCGATGAG

Product: OmpR family two-component system response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MRVLLVEDNPLLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGLEVLRRLRARRNPVPVLILTA
HGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSLGHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEV
LILRNGRAINKETLSEKIFGLDESVNADAIEIYVYRLRKKLENSGVAIVTLRGLGYLLEAKADA

Sequences:

>Translated_224_residues
MRVLLVEDNPLLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGLEVLRRLRARRNPVPVLILTA
HGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSLGHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEV
LILRNGRAINKETLSEKIFGLDESVNADAIEIYVYRLRKKLENSGVAIVTLRGLGYLLEAKADA
>Mature_224_residues
MRVLLVEDNPLLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGLEVLRRLRARRNPVPVLILTA
HGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSLGHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEV
LILRNGRAINKETLSEKIFGLDESVNADAIEIYVYRLRKKLENSGVAIVTLRGLGYLLEAKADA

Specific function: Transcriptional activator of the tctI tricarboxylate transport system operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=221, Percent_Identity=42.0814479638009, Blast_Score=169, Evalue=9e-44,
Organism=Escherichia coli, GI1790552, Length=223, Percent_Identity=40.3587443946188, Blast_Score=164, Evalue=5e-42,
Organism=Escherichia coli, GI1786784, Length=223, Percent_Identity=37.6681614349776, Blast_Score=150, Evalue=6e-38,
Organism=Escherichia coli, GI1787375, Length=221, Percent_Identity=38.0090497737557, Blast_Score=143, Evalue=9e-36,
Organism=Escherichia coli, GI87082012, Length=220, Percent_Identity=37.2727272727273, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=33.920704845815, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1786599, Length=225, Percent_Identity=31.5555555555556, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1788394, Length=226, Percent_Identity=33.1858407079646, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=35.0877192982456, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=34.375, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=33.4841628959276, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787229, Length=227, Percent_Identity=29.9559471365639, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1790863, Length=226, Percent_Identity=29.2035398230088, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788550, Length=123, Percent_Identity=32.520325203252, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1790437, Length=123, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788713, Length=115, Percent_Identity=33.0434782608696, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1790299, Length=120, Percent_Identity=30.8333333333333, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI145693140, Length=236, Percent_Identity=24.5762711864407, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24821; Mature: 24821

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLLVEDNPLLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL
CEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCCHH
EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL
HHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
GHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIFG
CCCCCCEEECCCCHHCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHC
LDESVNADAIEIYVYRLRKKLENSGVAIVTLRGLGYLLEAKADA
CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCC
>Mature Secondary Structure
MRVLLVEDNPLLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL
CEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCCHH
EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL
HHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
GHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIFG
CCCCCCEEECCCCHHCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHC
LDESVNADAIEIYVYRLRKKLENSGVAIVTLRGLGYLLEAKADA
CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2666399; 11083839; 11677609 [H]