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The map label for this gene is ybiC [C]

Identifier: 189352825

GI number: 189352825

Start: 946759

End: 947781

Strand: Reverse

Name: ybiC [C]

Synonym: BMULJ_04059

Alternate gene names: 189352825

Gene position: 947781-946759 (Counterclockwise)

Preceding gene: 189352826

Following gene: 189352824

Centisome position: 38.32

GC content: 69.6

Gene sequence:

>1023_bases
ATGGCTGAGCCGATCGACGCCGTCGTCCTGTCGCTCGATGAAGTCCACGCGCTCGCGCTGCGCGTGCTCACGCATCACGG
GCTGTCGGACGCGCATGCGCGCGCGATCGCGAACGTCATCACGCAAGGCCAGCGCGACGAGTGCCACTCGCACGGCGTCT
ACCGGCTGCTCGTCTGCGTGCGTTCGCTGCGCAAGGGCAAGGTCGACCCGCAGGCGGTGCCGACGCTGCGGCGGCTCTCG
TCGTCGATCGTCGCCGTCGACGCGCATCGCGGCTTCTCGCTGCTGAGCTTCGAGACGGGCCTGCCCGTGCTCGTCGAGAT
GACGAAGCAGCACGGGATCGCCGCGATGGTGATCAACCGCTGCTATCACTTCTCCGCGCTCTGGCCCGAGGTCGAGGCCA
TCGCGGCGGAAGGGCTCGTCGGCATCGCGATGAATCCGAGTCACAGCTGGGTCGCGCCGGAAGGCGGCAAGGAGCCCGTA
TTCGGCACGAACCCGATCGCGTTCGCGTGGCCGCGGCCGGGCGGCATGCCGTTCGTGTTCGATTTCGCGACCAGTGCGAT
CGCGCGCGGCGACATCGAACTGCACGCGAAGCAAGGCAAGCCGATCCCGCCCGAATGGGCGATCGACGCGCAAGGTCGGC
CGACCACCGATCCGCAAGCCGCGCTGCAAGGCGCGATGCGCACGTTCGGCGGCCACAAGGGATCGGCGCTCGCGGCGATG
GTCGAACTGCTCGGCGGCGCGTTGATCGGCGACCTGACGAGCCGCGAATCGATGGACTTCGACGAAGGCGTCGGCGCGAC
GCCGTGCCACGGCGAGCTCGCGATCGCGTTCGATCCGAAGGTCTTCCTCGGCGACGATCTCGACGCGGGCCTCGCGCGCG
GCGAGCGGATGTTCGACTCGATCGTCGCGCAGGGTGCGCGGCTGCCGTCGCAGCGGCGCTTCGATGCGCGCGCCCGCAGC
ATCGCGAACGGCGTGCGCATCCCGCGCGCGCTGTACGACGAAATCGTCGCGCTGCTCGACTGA

Upstream 100 bases:

>100_bases
GACGTGCCGGACGCACTGCTGCCCGACGCGATCCGCGATGCGAATCCGCTGAACGTGCCGCAGCGCATCGACGGCGTGCC
GATGCCGCGCGAGGCGCGCA

Downstream 100 bases:

>100_bases
GCGGCGAGCGGCTGGCGGCCGCGCGAGCGGGCTGGCGCGGGCCGCCGCCCCCACCCGCGCGGCGCCTGTGGGATAATCGC
CGGGTTTGCCCAGGGCGCAG

Product: malate dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MAEPIDAVVLSLDEVHALALRVLTHHGLSDAHARAIANVITQGQRDECHSHGVYRLLVCVRSLRKGKVDPQAVPTLRRLS
SSIVAVDAHRGFSLLSFETGLPVLVEMTKQHGIAAMVINRCYHFSALWPEVEAIAAEGLVGIAMNPSHSWVAPEGGKEPV
FGTNPIAFAWPRPGGMPFVFDFATSAIARGDIELHAKQGKPIPPEWAIDAQGRPTTDPQAALQGAMRTFGGHKGSALAAM
VELLGGALIGDLTSRESMDFDEGVGATPCHGELAIAFDPKVFLGDDLDAGLARGERMFDSIVAQGARLPSQRRFDARARS
IANGVRIPRALYDEIVALLD

Sequences:

>Translated_340_residues
MAEPIDAVVLSLDEVHALALRVLTHHGLSDAHARAIANVITQGQRDECHSHGVYRLLVCVRSLRKGKVDPQAVPTLRRLS
SSIVAVDAHRGFSLLSFETGLPVLVEMTKQHGIAAMVINRCYHFSALWPEVEAIAAEGLVGIAMNPSHSWVAPEGGKEPV
FGTNPIAFAWPRPGGMPFVFDFATSAIARGDIELHAKQGKPIPPEWAIDAQGRPTTDPQAALQGAMRTFGGHKGSALAAM
VELLGGALIGDLTSRESMDFDEGVGATPCHGELAIAFDPKVFLGDDLDAGLARGERMFDSIVAQGARLPSQRRFDARARS
IANGVRIPRALYDEIVALLD
>Mature_339_residues
AEPIDAVVLSLDEVHALALRVLTHHGLSDAHARAIANVITQGQRDECHSHGVYRLLVCVRSLRKGKVDPQAVPTLRRLSS
SIVAVDAHRGFSLLSFETGLPVLVEMTKQHGIAAMVINRCYHFSALWPEVEAIAAEGLVGIAMNPSHSWVAPEGGKEPVF
GTNPIAFAWPRPGGMPFVFDFATSAIARGDIELHAKQGKPIPPEWAIDAQGRPTTDPQAALQGAMRTFGGHKGSALAAMV
ELLGGALIGDLTSRESMDFDEGVGATPCHGELAIAFDPKVFLGDDLDAGLARGERMFDSIVAQGARLPSQRRFDARARSI
ANGVRIPRALYDEIVALLD

Specific function: Unknown

COG id: COG2055

COG function: function code C; Malate/L-lactate dehydrogenases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LDH2/MDH2 oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787020, Length=289, Percent_Identity=31.1418685121107, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1786727, Length=333, Percent_Identity=27.6276276276276, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1790000, Length=350, Percent_Identity=25.1428571428571, Blast_Score=86, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17507179, Length=285, Percent_Identity=27.3684210526316, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17536633, Length=299, Percent_Identity=26.7558528428094, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24667904, Length=261, Percent_Identity=28.735632183908, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI45553211, Length=261, Percent_Identity=28.735632183908, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24667912, Length=261, Percent_Identity=28.735632183908, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24667908, Length=261, Percent_Identity=28.735632183908, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24658010, Length=281, Percent_Identity=25.9786476868327, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24648360, Length=252, Percent_Identity=28.968253968254, Blast_Score=72, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003767 [H]

Pfam domain/function: PF02615 Ldh_2 [H]

EC number: 1.1.1.- [C]

Molecular weight: Translated: 36407; Mature: 36276

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEPIDAVVLSLDEVHALALRVLTHHGLSDAHARAIANVITQGQRDECHSHGVYRLLVCV
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHH
RSLRKGKVDPQAVPTLRRLSSSIVAVDAHRGFSLLSFETGLPVLVEMTKQHGIAAMVINR
HHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCHHHHHHHHHCCHHHHHHHH
CYHFSALWPEVEAIAAEGLVGIAMNPSHSWVAPEGGKEPVFGTNPIAFAWPRPGGMPFVF
HHHHHHHCHHHHHHHHCCEEEEEECCCCCEECCCCCCCCCCCCCCEEEECCCCCCCCEEH
DFATSAIARGDIELHAKQGKPIPPEWAIDAQGRPTTDPQAALQGAMRTFGGHKGSALAAM
HHHHHHHHCCCEEEEECCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
VELLGGALIGDLTSRESMDFDEGVGATPCHGELAIAFDPKVFLGDDLDAGLARGERMFDS
HHHHCCHHHHCCCCCCCCCHHCCCCCCCCCCCEEEEECCCEEECCCCHHHHHHHHHHHHH
IVAQGARLPSQRRFDARARSIANGVRIPRALYDEIVALLD
HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure 
AEPIDAVVLSLDEVHALALRVLTHHGLSDAHARAIANVITQGQRDECHSHGVYRLLVCV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHH
RSLRKGKVDPQAVPTLRRLSSSIVAVDAHRGFSLLSFETGLPVLVEMTKQHGIAAMVINR
HHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCHHHHHHHHHCCHHHHHHHH
CYHFSALWPEVEAIAAEGLVGIAMNPSHSWVAPEGGKEPVFGTNPIAFAWPRPGGMPFVF
HHHHHHHCHHHHHHHHCCEEEEEECCCCCEECCCCCCCCCCCCCCEEEECCCCCCCCEEH
DFATSAIARGDIELHAKQGKPIPPEWAIDAQGRPTTDPQAALQGAMRTFGGHKGSALAAM
HHHHHHHHCCCEEEEECCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
VELLGGALIGDLTSRESMDFDEGVGATPCHGELAIAFDPKVFLGDDLDAGLARGERMFDS
HHHHCCHHHHCCCCCCCCCHHCCCCCCCCCCCEEEEECCCEEECCCCHHHHHHHHHHHHH
IVAQGARLPSQRRFDARARSIANGVRIPRALYDEIVALLD
HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]