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The map label for this gene is rraA [C]

Identifier: 189352579

GI number: 189352579

Start: 653667

End: 654365

Strand: Direct

Name: rraA [C]

Synonym: BMULJ_03810

Alternate gene names: 189352579

Gene position: 653667-654365 (Clockwise)

Preceding gene: 189352577

Following gene: 189352580

Centisome position: 26.43

GC content: 69.53

Gene sequence:

>699_bases
ATGAGCAAGCCAGCCGTCAGCAGTTCTCCGATCAATCGCGACATCGAACGCGTGCCGCCCGAGCTCGTTCAGGCTGCCGC
ACGCTATCAAGCGGCGATCCTGGCCGATGTTGCGGGCCGCCGCGGCACGGTACATGGCCGCGTGCGGCCGCTGTCGCCCA
CGATGAAGGTCGCCGGCCCCGCGGTCACGGTCGAAGTGCGCGCGGGCGACAACCTGGCGATCCATGCGGCACTCGCCGTT
GCGAAACCGGGTGACGTCATCGTGGTCGACGGCAAGGGCGACATCTCGTGCGCGCTGCTCGGCGAAATCATGGCGACGCA
GGCGAAGGCGAGCGGCATCGCCGGGATCGTCATCGACGGCGCGGTGCGCGACGCACACGAGCTGGCCAACGGCGACTATC
CGATCTTCGCGGCCGGCCTCAATCCGTGCGGCCCGACGAAAAGCGTCGCGGGGCGCGTGAATGCGCCGATCTCGCTCGGC
GGCACGGCCGTCAACCCGGGCGACCTGGTGGTCGGCGACGCGGACGGCGTCGTGGTCATTGCGCGCGCCGACGTCGCGCG
CATCGTCGATCTCGCGCAGAAAAAGCTGGACGCCGAAACCGCGCGTATCGCGGCGATCCACAAGGGCGACGTCCGTCCGG
GCTGGATCGAGAAGGAACTGCGCGCAGCCGGCATGCTGGCCGAAGGCGAGGCGCTGTGA

Upstream 100 bases:

>100_bases
GGGTAAACGCTAGTGCCAGACGGCAGGTCATGTCGTTATAGTGATTTCACACTGTACACCAGCGTTGTACATAGTACAAC
GCGCAACATGAGGTCGAACG

Downstream 100 bases:

>100_bases
TGCAGACCGCTTCGCACAAGCCCGTGGTCCTCGTGACCGCCGCCGACCTTGCACCGCAAGCGCTCGAGATGCTTGCGCAG
TTCGACGTCGTGTTCGCCGG

Product: putative dimethylmenaquinone methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSKPAVSSSPINRDIERVPPELVQAAARYQAAILADVAGRRGTVHGRVRPLSPTMKVAGPAVTVEVRAGDNLAIHAALAV
AKPGDVIVVDGKGDISCALLGEIMATQAKASGIAGIVIDGAVRDAHELANGDYPIFAAGLNPCGPTKSVAGRVNAPISLG
GTAVNPGDLVVGDADGVVVIARADVARIVDLAQKKLDAETARIAAIHKGDVRPGWIEKELRAAGMLAEGEAL

Sequences:

>Translated_232_residues
MSKPAVSSSPINRDIERVPPELVQAAARYQAAILADVAGRRGTVHGRVRPLSPTMKVAGPAVTVEVRAGDNLAIHAALAV
AKPGDVIVVDGKGDISCALLGEIMATQAKASGIAGIVIDGAVRDAHELANGDYPIFAAGLNPCGPTKSVAGRVNAPISLG
GTAVNPGDLVVGDADGVVVIARADVARIVDLAQKKLDAETARIAAIHKGDVRPGWIEKELRAAGMLAEGEAL
>Mature_231_residues
SKPAVSSSPINRDIERVPPELVQAAARYQAAILADVAGRRGTVHGRVRPLSPTMKVAGPAVTVEVRAGDNLAIHAALAVA
KPGDVIVVDGKGDISCALLGEIMATQAKASGIAGIVIDGAVRDAHELANGDYPIFAAGLNPCGPTKSVAGRVNAPISLGG
TAVNPGDLVVGDADGVVVIARADVARIVDLAQKKLDAETARIAAIHKGDVRPGWIEKELRAAGMLAEGEAL

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 23585; Mature: 23454

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPAVSSSPINRDIERVPPELVQAAARYQAAILADVAGRRGTVHGRVRPLSPTMKVAGP
CCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEECCC
AVTVEVRAGDNLAIHAALAVAKPGDVIVVDGKGDISCALLGEIMATQAKASGIAGIVIDG
EEEEEEECCCCEEEEEEEEEECCCCEEEEECCCCEEHHHHHHHHHHHHHCCCEEEEEEEC
AVRDAHELANGDYPIFAAGLNPCGPTKSVAGRVNAPISLGGTAVNPGDLVVGDADGVVVI
CHHHHHHHCCCCCCEEEECCCCCCCCHHHCCCCCCCEEECCCEECCCCEEEECCCCEEEE
ARADVARIVDLAQKKLDAETARIAAIHKGDVRPGWIEKELRAAGMLAEGEAL
ECCCHHHHHHHHHHHHCCCHHEEEEEECCCCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SKPAVSSSPINRDIERVPPELVQAAARYQAAILADVAGRRGTVHGRVRPLSPTMKVAGP
CCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEECCC
AVTVEVRAGDNLAIHAALAVAKPGDVIVVDGKGDISCALLGEIMATQAKASGIAGIVIDG
EEEEEEECCCCEEEEEEEEEECCCCEEEEECCCCEEHHHHHHHHHHHHHCCCEEEEEEEC
AVRDAHELANGDYPIFAAGLNPCGPTKSVAGRVNAPISLGGTAVNPGDLVVGDADGVVVI
CHHHHHHHCCCCCCEEEECCCCCCCCHHHCCCCCCCEEECCCEECCCCEEEECCCCEEEE
ARADVARIVDLAQKKLDAETARIAAIHKGDVRPGWIEKELRAAGMLAEGEAL
ECCCHHHHHHHHHHHHCCCHHEEEEEECCCCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]