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The map label for this gene is yvbU [H]

Identifier: 189352300

GI number: 189352300

Start: 348143

End: 349051

Strand: Reverse

Name: yvbU [H]

Synonym: BMULJ_03519

Alternate gene names: 189352300

Gene position: 349051-348143 (Counterclockwise)

Preceding gene: 189352301

Following gene: 189352299

Centisome position: 14.11

GC content: 67.11

Gene sequence:

>909_bases
ATGACGCTCGCCCAGTTGCAGGCCCTCGCCGCCGTGGTCGAACTCGGCTCGCTGACGGCGGCCGCCGACCGGCTCAACCG
CAGTCAATCCGCGATCAGCCATGCGCTGACCGAACTTGAAGACCTCACGGGTGTGAAGCTGCTCATGCGCGACCGCCAGC
CGGTCGCCCTGACGGCGGCCGGCGAACGTCTGTGGCCATACGTGAGGAACGTGGTGCGCGAAGCGCAAACGCTGCGCCAG
CAGTTCAGCCTGTCGCGCGGCAGGCTCGAAGGACGGCTGGTGGTCGCGTCGCTGCCGAGCGTGTCGCTCGCGTTCGTGGC
GCCCGCGCTCGAGGCGCTGAAAGCGATGCATCCGGGCGTGTCGGCGGTGCTGCTCGAAGGCACCGACACGGAAGTCGAAG
CATGGATCGACGACGGCACCGCCGATGTCGGCGTGGTGGCGGGCAGCAAGACGTTCGCGAACCATTTGCCGCTGCTCGAC
GAGGATTTCGTCGCGGTCGCGGCGGCCGGCAGCTTCGACGATCGCAAGAGCGTGTCCGCAAAACACCTGTCCGCGCTGCC
GTTCATTTTCTCGAAGGCCGGCTGCGGGCCCGTGATTGCGGATTACTTTGCGCGCGGCGGCGTGCCGCTTCGCGCCGCCT
TCAACGTGGTCGAGATGCGCACGATCCTGTCGATGGCCGAGGCCGGCATGGGCGTGTCGATCGTGCCGCGCATCACGCTC
ACTTACACGCCGTTCGCCGGCCGCGTATTGACGCTCTCGCCGAAGCTGCAGCGTTCGGTGCGATTGGCGTGGAACCGGAC
CGGCAACGCGGTGGCCGATGAATTCATCAGGCTCGTCGCCGAGCAGCGCGTGAAGGCCGGCACGGCAATCCGGAAACGGG
CATCGAAGCGGGCCTCAAAAGAAAAGTAG

Upstream 100 bases:

>100_bases
CGCTTACGGCCGCTTCCCGCGTCGTCGCATCCCTTCAATATAATTCATGACGTGCCGCCATTTCATGCGCGGCCCACATG
CATCGATCGAAGGGATTCAG

Downstream 100 bases:

>100_bases
TGCTTCAATGCGGGATGAAAAGCGCTCATGCGCGGCTTGCAGATTATTCACGCCGGATGCCCGCGATATGCAATACATTG
CACGGAGCCTGTCGACCCAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MTLAQLQALAAVVELGSLTAAADRLNRSQSAISHALTELEDLTGVKLLMRDRQPVALTAAGERLWPYVRNVVREAQTLRQ
QFSLSRGRLEGRLVVASLPSVSLAFVAPALEALKAMHPGVSAVLLEGTDTEVEAWIDDGTADVGVVAGSKTFANHLPLLD
EDFVAVAAAGSFDDRKSVSAKHLSALPFIFSKAGCGPVIADYFARGGVPLRAAFNVVEMRTILSMAEAGMGVSIVPRITL
TYTPFAGRVLTLSPKLQRSVRLAWNRTGNAVADEFIRLVAEQRVKAGTAIRKRASKRASKEK

Sequences:

>Translated_302_residues
MTLAQLQALAAVVELGSLTAAADRLNRSQSAISHALTELEDLTGVKLLMRDRQPVALTAAGERLWPYVRNVVREAQTLRQ
QFSLSRGRLEGRLVVASLPSVSLAFVAPALEALKAMHPGVSAVLLEGTDTEVEAWIDDGTADVGVVAGSKTFANHLPLLD
EDFVAVAAAGSFDDRKSVSAKHLSALPFIFSKAGCGPVIADYFARGGVPLRAAFNVVEMRTILSMAEAGMGVSIVPRITL
TYTPFAGRVLTLSPKLQRSVRLAWNRTGNAVADEFIRLVAEQRVKAGTAIRKRASKRASKEK
>Mature_301_residues
TLAQLQALAAVVELGSLTAAADRLNRSQSAISHALTELEDLTGVKLLMRDRQPVALTAAGERLWPYVRNVVREAQTLRQQ
FSLSRGRLEGRLVVASLPSVSLAFVAPALEALKAMHPGVSAVLLEGTDTEVEAWIDDGTADVGVVAGSKTFANHLPLLDE
DFVAVAAAGSFDDRKSVSAKHLSALPFIFSKAGCGPVIADYFARGGVPLRAAFNVVEMRTILSMAEAGMGVSIVPRITLT
YTPFAGRVLTLSPKLQRSVRLAWNRTGNAVADEFIRLVAEQRVKAGTAIRKRASKRASKEK

Specific function: Transcriptional Activator Of The Hca Operon For 3- Phenylpropionic Acid Catabolism. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788887, Length=303, Percent_Identity=25.0825082508251, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI145693105, Length=250, Percent_Identity=24, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788748, Length=296, Percent_Identity=27.3648648648649, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788481, Length=269, Percent_Identity=28.6245353159851, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1790399, Length=293, Percent_Identity=25.2559726962457, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788706, Length=175, Percent_Identity=26.2857142857143, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789204, Length=255, Percent_Identity=27.4509803921569, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790208, Length=254, Percent_Identity=26.3779527559055, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786401, Length=150, Percent_Identity=29.3333333333333, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32343; Mature: 32212

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLAQLQALAAVVELGSLTAAADRLNRSQSAISHALTELEDLTGVKLLMRDRQPVALTAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
GERLWPYVRNVVREAQTLRQQFSLSRGRLEGRLVVASLPSVSLAFVAPALEALKAMHPGV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCC
SAVLLEGTDTEVEAWIDDGTADVGVVAGSKTFANHLPLLDEDFVAVAAAGSFDDRKSVSA
EEEEEECCCCCEEEEECCCCCCEEEEECCHHHHHCCCCCCCCCEEEEECCCCCCHHHHHH
KHLSALPFIFSKAGCGPVIADYFARGGVPLRAAFNVVEMRTILSMAEAGMGVSIVPRITL
HHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECEEEE
TYTPFAGRVLTLSPKLQRSVRLAWNRTGNAVADEFIRLVAEQRVKAGTAIRKRASKRASK
EECCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EK
CC
>Mature Secondary Structure 
TLAQLQALAAVVELGSLTAAADRLNRSQSAISHALTELEDLTGVKLLMRDRQPVALTAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
GERLWPYVRNVVREAQTLRQQFSLSRGRLEGRLVVASLPSVSLAFVAPALEALKAMHPGV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCC
SAVLLEGTDTEVEAWIDDGTADVGVVAGSKTFANHLPLLDEDFVAVAAAGSFDDRKSVSA
EEEEEECCCCCEEEEECCCCCCEEEEECCHHHHHCCCCCCCCCEEEEECCCCCCHHHHHH
KHLSALPFIFSKAGCGPVIADYFARGGVPLRAAFNVVEMRTILSMAEAGMGVSIVPRITL
HHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECEEEE
TYTPFAGRVLTLSPKLQRSVRLAWNRTGNAVADEFIRLVAEQRVKAGTAIRKRASKRASK
EECCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]