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The map label for this gene is tctD [H]

Identifier: 189352202

GI number: 189352202

Start: 240869

End: 241534

Strand: Reverse

Name: tctD [H]

Synonym: BMULJ_03420

Alternate gene names: 189352202

Gene position: 241534-240869 (Counterclockwise)

Preceding gene: 189352209

Following gene: 189352201

Centisome position: 9.77

GC content: 68.47

Gene sequence:

>666_bases
ATGCGCATTCTCGTCGTGGAGGACGATGCGGAGATCGGCGCGGCGATCCGCAGCCGCCTCGCGCGGCTCGGCCATGCCGT
CGATCTCGAAACCGACGGCTCGACCGCGAACAGCCTGCTGCGCGTCGAGCGCTTCGACCTCGTCGTGCTCGACGCCAACC
TGCCCGGCCTCGACGGCTTCGCGGTGCTGCGCAACCTGCGCGCCGCGGGCAGCACGACGCCGGTGCTGCTCGTCACCGCG
CGTTCGGCGATCGACGATCGCGTCAGCGGTCTCGGCCTCGGCGCCGACGACTATCTCGTGAAGCCGTTCGACTACCGCGA
GCTCGACGCGCGCGTGCAGGCGCTGCTACGCCGCAACAGCGGCCATGCGAGCGACGTGCTGACGCTCGGCGGCCTCGTGA
TCGACCGCAGCAGCCGCCTCGCGGAACTCGACGGCAAGCCGCTGTCGCTGTCGCGCCAGGAGTTCGCGCTGCTCGAGATT
CTCGCGAGCCGCCCGCAGCGGATCTTCTCGAAGGACGAACTACTGAATCAGCTGTTCAGTTTCGGCAACGAGCCGAGCGC
GAACGCGGTCGAGCAGTATGTAACGCGCGTGCGCAAAAAGCTGCAAGGCAGCTCGGTCGAGATCCGCACCGCGCGCGGGA
TGGGGTATCAGATTGCCGCGCACTGA

Upstream 100 bases:

>100_bases
TTCGCATGCTCCGGCTCGACACAGGTTATCGAGCGAGTCTGAGAAAATGCTGACATCCCGGCCTCGGGAAAACCCGTAAC
CCCTACCTGCAAACGGCACC

Downstream 100 bases:

>100_bases
CTGGTTCCCGAAGACGCTGTTCGGGCGCACGCTGCTGTTCATCGCGCTCGTCGTCGCGACCGGCGCGCTCGCGCTCGCCG
CGATCGCGCGCTACTACGCC

Product: OmpR family two-component system response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGFAVLRNLRAAGSTTPVLLVTA
RSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHASDVLTLGGLVIDRSSRLAELDGKPLSLSRQEFALLEI
LASRPQRIFSKDELLNQLFSFGNEPSANAVEQYVTRVRKKLQGSSVEIRTARGMGYQIAAH

Sequences:

>Translated_221_residues
MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGFAVLRNLRAAGSTTPVLLVTA
RSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHASDVLTLGGLVIDRSSRLAELDGKPLSLSRQEFALLEI
LASRPQRIFSKDELLNQLFSFGNEPSANAVEQYVTRVRKKLQGSSVEIRTARGMGYQIAAH
>Mature_221_residues
MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGFAVLRNLRAAGSTTPVLLVTA
RSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHASDVLTLGGLVIDRSSRLAELDGKPLSLSRQEFALLEI
LASRPQRIFSKDELLNQLFSFGNEPSANAVEQYVTRVRKKLQGSSVEIRTARGMGYQIAAH

Specific function: Transcriptional activator of the tctI tricarboxylate transport system operon [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=219, Percent_Identity=44.7488584474886, Blast_Score=182, Evalue=1e-47,
Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=37.5565610859729, Blast_Score=146, Evalue=8e-37,
Organism=Escherichia coli, GI87082012, Length=223, Percent_Identity=38.1165919282511, Blast_Score=142, Evalue=1e-35,
Organism=Escherichia coli, GI1787375, Length=218, Percent_Identity=35.7798165137615, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI1786784, Length=221, Percent_Identity=35.2941176470588, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1786599, Length=224, Percent_Identity=35.2678571428571, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=34.3612334801762, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1788394, Length=226, Percent_Identity=34.5132743362832, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=33.9366515837104, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1787229, Length=226, Percent_Identity=34.5132743362832, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI2367329, Length=226, Percent_Identity=34.5132743362832, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI145693140, Length=234, Percent_Identity=32.9059829059829, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=31.6017316017316, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786911, Length=230, Percent_Identity=30.4347826086957, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1790437, Length=126, Percent_Identity=35.7142857142857, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1788550, Length=119, Percent_Identity=34.453781512605, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788191, Length=121, Percent_Identity=31.404958677686, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1790299, Length=111, Percent_Identity=34.2342342342342, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1788713, Length=115, Percent_Identity=31.304347826087, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787487, Length=101, Percent_Identity=34.6534653465347, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24095; Mature: 24095

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF
CEEEEEECCHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHEEEEEEEEEEECCCCCCHHH
AVLRNLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS
HHHHHHHHCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHCCC
GHASDVLTLGGLVIDRSSRLAELDGKPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS
CCHHHHHHHCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
FGNEPSANAVEQYVTRVRKKLQGSSVEIRTARGMGYQIAAH
CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECC
>Mature Secondary Structure
MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF
CEEEEEECCHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHEEEEEEEEEEECCCCCCHHH
AVLRNLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS
HHHHHHHHCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHCCC
GHASDVLTLGGLVIDRSSRLAELDGKPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS
CCHHHHHHHCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
FGNEPSANAVEQYVTRVRKKLQGSSVEIRTARGMGYQIAAH
CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2666399; 11083839; 11677609 [H]