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The map label for this gene is ykgD [C]

Identifier: 189352184

GI number: 189352184

Start: 219779

End: 220780

Strand: Reverse

Name: ykgD [C]

Synonym: BMULJ_03402

Alternate gene names: 189352184

Gene position: 220780-219779 (Counterclockwise)

Preceding gene: 189352186

Following gene: 189352181

Centisome position: 8.93

GC content: 72.36

Gene sequence:

>1002_bases
ATGCCCGACACGCTGCCTCCCGTCACGCCCGACGCGCACGATCTCGTCAGCGAGCTACTGCTCGGGATGCGGCTGAGCGG
CGTCCAGTACCGCCGCATCCAGGTCGCGCGGCCGTTCGGCCTGAGCTTCGGGCAGGCGCCCGGTCGCGCGCAGTTCCATT
TCGTCGGGCGCGGGCCCGTGCTGCTGCGCGACGCGGCGGGCACGACGATGCAGCTCGAGGCCGGCGATGCGATCCTGCTG
CCGCACGGCAACATGCATACGCTCGTGTCCGACCCCGACGTGCCGTGCCGCGAAATCGGCGGCTTCGAGGTCGCGCGGAT
CTGCGATTCGGTCGCGTCGGTCGCATCGACGGGCGCGGCGACCGACGGCGCCGCGGCCGATTCCGCCGGCGGCGATGCGC
TGATCTTCAGCGCGTGCATGGAACTCGATCTCGGCGGGATGCAGCCGCTCGTCGGCACGATGCCCGAGTTCATGCACGTC
GGCACGCTGCTCGCGCGCTATCCGGAGATCCGGCCGATGCTCGACGCGATGGAGCGCGAATCCTGCGCCGAGCGCGCAGG
CTTCGCGGGCATTCTCGCGCGGCTCGCGGACGTCGTCGCCGCGTTCATCGTGCGCGGCTGGGTCGAATGCGGATGCGGCG
ACGCGTCCGGCTGGGTGCAGGCGCTGCGCGAGCCGAAGCTTGGCCGCGCGATCGTCGCGCTGCATCGCGATCCGGGCCGC
AACTGGAGCGTGGCCGAACTCGCCGCCGAGGCCGGCGTGTCGCGCTCGGTGTTCGCCGAACGTTTTCTCGCGGCGACCGG
GATGACGCCCGTGCGCTACCTGACCGAGCTGCGGATGCGGCTTGCCGCACGCTGGATCGCGCGCGATCGCGAGGCGATCG
AGACGGTCGCGTATCGGCTCGGCTACGGATCGCTCGCCGCGTTCAGCCGCGCGTTCAAACGCGTCGTCGGGCGGCCGCCG
GGCGCGCTGCGCGCCGACGCTGACGCAGACGCCGCGGCATGA

Upstream 100 bases:

>100_bases
CCGTATCGTAAAAGGTCGATGACGGCGTATCGTAAGGAGCGACGGCAGGACGGTCTATGACATACAATCCGTCTTTATTG
ATCAAACGTCCGAGAATGCG

Downstream 100 bases:

>100_bases
CGGCTTCGGCACGCCGTGGTCGCCGCTGGGTCACGCCGTCGTCGGTGATCGAGTAGCGCTTGCGCTGCTCGTGCGGCACG
TCGACCGTCTTCACGCGGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MPDTLPPVTPDAHDLVSELLLGMRLSGVQYRRIQVARPFGLSFGQAPGRAQFHFVGRGPVLLRDAAGTTMQLEAGDAILL
PHGNMHTLVSDPDVPCREIGGFEVARICDSVASVASTGAATDGAAADSAGGDALIFSACMELDLGGMQPLVGTMPEFMHV
GTLLARYPEIRPMLDAMERESCAERAGFAGILARLADVVAAFIVRGWVECGCGDASGWVQALREPKLGRAIVALHRDPGR
NWSVAELAAEAGVSRSVFAERFLAATGMTPVRYLTELRMRLAARWIARDREAIETVAYRLGYGSLAAFSRAFKRVVGRPP
GALRADADADAAA

Sequences:

>Translated_333_residues
MPDTLPPVTPDAHDLVSELLLGMRLSGVQYRRIQVARPFGLSFGQAPGRAQFHFVGRGPVLLRDAAGTTMQLEAGDAILL
PHGNMHTLVSDPDVPCREIGGFEVARICDSVASVASTGAATDGAAADSAGGDALIFSACMELDLGGMQPLVGTMPEFMHV
GTLLARYPEIRPMLDAMERESCAERAGFAGILARLADVVAAFIVRGWVECGCGDASGWVQALREPKLGRAIVALHRDPGR
NWSVAELAAEAGVSRSVFAERFLAATGMTPVRYLTELRMRLAARWIARDREAIETVAYRLGYGSLAAFSRAFKRVVGRPP
GALRADADADAAA
>Mature_332_residues
PDTLPPVTPDAHDLVSELLLGMRLSGVQYRRIQVARPFGLSFGQAPGRAQFHFVGRGPVLLRDAAGTTMQLEAGDAILLP
HGNMHTLVSDPDVPCREIGGFEVARICDSVASVASTGAATDGAAADSAGGDALIFSACMELDLGGMQPLVGTMPEFMHVG
TLLARYPEIRPMLDAMERESCAERAGFAGILARLADVVAAFIVRGWVECGCGDASGWVQALREPKLGRAIVALHRDPGRN
WSVAELAAEAGVSRSVFAERFLAATGMTPVRYLTELRMRLAARWIARDREAIETVAYRLGYGSLAAFSRAFKRVVGRPPG
ALRADADADAAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=161, Percent_Identity=31.6770186335404, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082197, Length=95, Percent_Identity=36.8421052631579, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35401; Mature: 35270

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDTLPPVTPDAHDLVSELLLGMRLSGVQYRRIQVARPFGLSFGQAPGRAQFHFVGRGPV
CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCE
LLRDAAGTTMQLEAGDAILLPHGNMHTLVSDPDVPCREIGGFEVARICDSVASVASTGAA
EEEECCCCEEEEECCCEEEECCCCEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCC
TDGAAADSAGGDALIFSACMELDLGGMQPLVGTMPEFMHVGTLLARYPEIRPMLDAMERE
CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
SCAERAGFAGILARLADVVAAFIVRGWVECGCGDASGWVQALREPKLGRAIVALHRDPGR
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCCC
NWSVAELAAEAGVSRSVFAERFLAATGMTPVRYLTELRMRLAARWIARDREAIETVAYRL
CCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYGSLAAFSRAFKRVVGRPPGALRADADADAAA
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PDTLPPVTPDAHDLVSELLLGMRLSGVQYRRIQVARPFGLSFGQAPGRAQFHFVGRGPV
CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCE
LLRDAAGTTMQLEAGDAILLPHGNMHTLVSDPDVPCREIGGFEVARICDSVASVASTGAA
EEEECCCCEEEEECCCEEEECCCCEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCC
TDGAAADSAGGDALIFSACMELDLGGMQPLVGTMPEFMHVGTLLARYPEIRPMLDAMERE
CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
SCAERAGFAGILARLADVVAAFIVRGWVECGCGDASGWVQALREPKLGRAIVALHRDPGR
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCCC
NWSVAELAAEAGVSRSVFAERFLAATGMTPVRYLTELRMRLAARWIARDREAIETVAYRL
CCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYGSLAAFSRAFKRVVGRPPGALRADADADAAA
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]