Click here to switch to the map view.

The map label for this gene is cmpR [H]

Identifier: 189352056

GI number: 189352056

Start: 75385

End: 76284

Strand: Direct

Name: cmpR [H]

Synonym: BMULJ_03273

Alternate gene names: 189352056

Gene position: 75385-76284 (Clockwise)

Preceding gene: 189352053

Following gene: 189352058

Centisome position: 3.05

GC content: 67.67

Gene sequence:

>900_bases
ATGATTGCGCGGCTCGGCAGCGTGTCGCGCGCGGCCGAAGAGCTGAACCTCACGCAGCCGGCCGTGTCGCTGCAGGTGCG
GCTGCTCGAGGAGGCGGTCGGCGCCGCCTTGCTGCAGCGCGTGGGGCGCGGCGTGCAGCTGACGGCGGCCGGCGAGATCG
TCGCGCGCTATGCGCGCGAGATCCTGCATCTGTGGAGCGAAGCCGGCGACGAAGTGGCCGCGCTGACGGGCGACCTCGGC
GGCACGCTGCGGATCGGCGCGATCACGACGGCCGAATACCTGATTCCGCCGTTGCTCGTGAAATTCACCGCGACGCGGCC
GCACGTGAAGACGTACTTCAAGGTCGGCAACCGCGACGACATCATCCGGATGCTCGCGACGCATGAAATCGATCTCGCGG
TGATGGGCAGCGCGCCGAAGGAGCTGCGCACGCATGCGGTCGAATTCGCGAAGCATCCGATGGTGTTCGTCGCGGCGCCC
GATCATCCGCTGATGCAGCGCAAGCGCGTCGCGCTGAAGGATCTCGAATCGGCGCACCTGCTCGTGCGCGAACGCGGCGC
GGGCACGCGCTCGACGGTCGAGAGCCTGTTCAAGACCTCCGGCTATCGCTTTCATGTGGGCTCCGAACTGTCGAGCAACG
AAGCGATCAAGCAGATGGCCGAGGCGGGGCTCGGCGTCGCGTTCCTGTCGCTGCATGCATGCGCGCTCGAACTGCGTACG
GGGCTGCTCAAGCAGCTGCCGTTTCCCGGCAATCCGATTGAGCGCGAGTGGTACGTGGTCACGGTTGCCGACCGCCGTAT
CTCGCAGGTGACGGGGCTGTTCCGCGATTTCCTGATCCGGCAGGGCGCGCCGGTGATCGACGGCGCGACGAGCGCGTCGC
ACGAGCGGCGACGCAAATGA

Upstream 100 bases:

>100_bases
TAGTTTGGCAACCCATCGAACAATTCAATGTTTATAAGCGACTCATATGTATTCACTTATAGGAAAGACCGCGACGTTCC
GGCAGCTGAAGGCGCTCGAC

Downstream 100 bases:

>100_bases
CGGGCGGGCGGCGGCGCGGGTTCGGCGTCAGCCGAGGCCGAAATCGTCGTTGCTATCGGGGATCGACGCGAGCAGCCGTT
CGAGCCGATGCCAGCCGACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MIARLGSVSRAAEELNLTQPAVSLQVRLLEEAVGAALLQRVGRGVQLTAAGEIVARYAREILHLWSEAGDEVAALTGDLG
GTLRIGAITTAEYLIPPLLVKFTATRPHVKTYFKVGNRDDIIRMLATHEIDLAVMGSAPKELRTHAVEFAKHPMVFVAAP
DHPLMQRKRVALKDLESAHLLVRERGAGTRSTVESLFKTSGYRFHVGSELSSNEAIKQMAEAGLGVAFLSLHACALELRT
GLLKQLPFPGNPIEREWYVVTVADRRISQVTGLFRDFLIRQGAPVIDGATSASHERRRK

Sequences:

>Translated_299_residues
MIARLGSVSRAAEELNLTQPAVSLQVRLLEEAVGAALLQRVGRGVQLTAAGEIVARYAREILHLWSEAGDEVAALTGDLG
GTLRIGAITTAEYLIPPLLVKFTATRPHVKTYFKVGNRDDIIRMLATHEIDLAVMGSAPKELRTHAVEFAKHPMVFVAAP
DHPLMQRKRVALKDLESAHLLVRERGAGTRSTVESLFKTSGYRFHVGSELSSNEAIKQMAEAGLGVAFLSLHACALELRT
GLLKQLPFPGNPIEREWYVVTVADRRISQVTGLFRDFLIRQGAPVIDGATSASHERRRK
>Mature_299_residues
MIARLGSVSRAAEELNLTQPAVSLQVRLLEEAVGAALLQRVGRGVQLTAAGEIVARYAREILHLWSEAGDEVAALTGDLG
GTLRIGAITTAEYLIPPLLVKFTATRPHVKTYFKVGNRDDIIRMLATHEIDLAVMGSAPKELRTHAVEFAKHPMVFVAAP
DHPLMQRKRVALKDLESAHLLVRERGAGTRSTVESLFKTSGYRFHVGSELSSNEAIKQMAEAGLGVAFLSLHACALELRT
GLLKQLPFPGNPIEREWYVVTVADRRISQVTGLFRDFLIRQGAPVIDGATSASHERRRK

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=28.0276816608997, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI157672245, Length=220, Percent_Identity=30.9090909090909, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1790399, Length=228, Percent_Identity=28.0701754385965, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081904, Length=288, Percent_Identity=28.125, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI145693105, Length=230, Percent_Identity=23.4782608695652, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787530, Length=238, Percent_Identity=26.4705882352941, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787879, Length=229, Percent_Identity=29.6943231441048, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786401, Length=277, Percent_Identity=28.8808664259928, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082132, Length=250, Percent_Identity=26.4, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787601, Length=134, Percent_Identity=32.8358208955224, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788297, Length=230, Percent_Identity=28.2608695652174, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=23.7931034482759, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790208, Length=226, Percent_Identity=28.3185840707965, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790262, Length=226, Percent_Identity=27.8761061946903, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788887, Length=189, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788626, Length=239, Percent_Identity=26.7782426778243, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI48994962, Length=143, Percent_Identity=31.4685314685315, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789440, Length=249, Percent_Identity=25.7028112449799, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32738; Mature: 32738

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIARLGSVSRAAEELNLTQPAVSLQVRLLEEAVGAALLQRVGRGVQLTAAGEIVARYARE
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHH
ILHLWSEAGDEVAALTGDLGGTLRIGAITTAEYLIPPLLVKFTATRPHVKTYFKVGNRDD
HHHHHHHCCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHH
IIRMLATHEIDLAVMGSAPKELRTHAVEFAKHPMVFVAAPDHPLMQRKRVALKDLESAHL
HHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
LVRERGAGTRSTVESLFKTSGYRFHVGSELSSNEAIKQMAEAGLGVAFLSLHACALELRT
HHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
GLLKQLPFPGNPIEREWYVVTVADRRISQVTGLFRDFLIRQGAPVIDGATSASHERRRK
HHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MIARLGSVSRAAEELNLTQPAVSLQVRLLEEAVGAALLQRVGRGVQLTAAGEIVARYARE
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHH
ILHLWSEAGDEVAALTGDLGGTLRIGAITTAEYLIPPLLVKFTATRPHVKTYFKVGNRDD
HHHHHHHCCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHH
IIRMLATHEIDLAVMGSAPKELRTHAVEFAKHPMVFVAAPDHPLMQRKRVALKDLESAHL
HHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
LVRERGAGTRSTVESLFKTSGYRFHVGSELSSNEAIKQMAEAGLGVAFLSLHACALELRT
HHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
GLLKQLPFPGNPIEREWYVVTVADRRISQVTGLFRDFLIRQGAPVIDGATSASHERRRK
HHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]