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The map label for this gene is prdF

Identifier: 189352038

GI number: 189352038

Start: 54696

End: 55712

Strand: Reverse

Name: prdF

Synonym: BMULJ_03255

Alternate gene names: NA

Gene position: 55712-54696 (Counterclockwise)

Preceding gene: 189352039

Following gene: 189352037

Centisome position: 2.25

GC content: 65.98

Gene sequence:

>1017_bases
ATGACGATTCACGGCTTTACCTGTATCGAAGGCCATACCGAGGGCATGCCCGTGCGCATGGTGATCGACGGCGCGCCAAC
GTTGCAGGGCGCGACGATGAACGCGCGCCGCGAGGATTTCGTGGCGCATCACGACTGGGTGCGCCGCACGCTGATGCTGG
AACCGCGCGGCCATGCGCACATGTCGGGCACGATCTTTTATCCACCGGTCAGCGACAACGCCGATTTCAGCCTGCTGTTC
ATCGAGACCTCGGGCTGCCTGCCGATGTGTGGTCACGCGACAATCGGCTCGATCGCGTTCGCCATCGAGGAGCGCCTCGT
CGTGCCGAAGCGACCGGGCACGGTGACGGTCGACGTACCGGCCGGACAGATCGTCGCGCGCTACCAGACCGACGGCGAAC
GCGTGACGTCGGTCCGCTTCACGAACGTGCCGAGCTTCCTGCTAAAGCGCGACGTCGAGATCGCGATTCCCGCGCTCGGC
ACGCTGGCCGTCGATATCGCGTATGGCGGCAATTTCTATCCGATCGTCGAGGTCCAGCCGAACTTCCCAGGCTGCGAGCA
CTTTACGCCGGACGAATTGCTGGCGTGGGGCCGTGACGTGCAGCGCGCCGTCGGCGACGCGCTAGAGGTCGTGCATCCCG
ACAATCCTGCGATTCGCGGCGTGCGGCATTGCATGTGGACGGGCAAGCCTATCGCGGACGACGCGCACGGCCGCGCGGTG
GTGATCGCCGGCGACAGCCTCGTCGACCGCTCGCCGTGCGGCACCGGCAGCTCTGCACGCGTCGCACAGCGTTTCGCGCG
CGGCTGGCTGAAAGAAGGCGAAGCGTACTGTCACGAGAGCCTGATCGGCAGCCGCTTCATCGGCCGCGTCGAATCGACGG
TGCGCCTCGAGAGCGGCGTCGATGCGGTGCTGTCGAGCATCGAGGGACGCGCCTGGGTCACGGGGCGCGCACAATACCGC
GTCGATCCGTCCCAACCGTATGCGCTCGGTTTCAGCCTGCAGGAGTTCGTCAATTGA

Upstream 100 bases:

>100_bases
GAAGGCCGAGTTCCGCGCGATCTTCGAAGCGTCGCAGGCGTAATCCCATGACGCGCACCGGCACCGCGTGGCGCCGGTGC
GCCGACCGAGGAACCTCAAC

Downstream 100 bases:

>100_bases
ACGCAATGCCCGAACCGCATGCCGGTGTGTCGCCCGGCGCTGCACGCAGCGAAACGGTCGTCGTAATCGGCGGCGGCATC
GTCGGCGTCTGCTGCGCACT

Product: hydroxyproline-2-epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MTIHGFTCIEGHTEGMPVRMVIDGAPTLQGATMNARREDFVAHHDWVRRTLMLEPRGHAHMSGTIFYPPVSDNADFSLLF
IETSGCLPMCGHATIGSIAFAIEERLVVPKRPGTVTVDVPAGQIVARYQTDGERVTSVRFTNVPSFLLKRDVEIAIPALG
TLAVDIAYGGNFYPIVEVQPNFPGCEHFTPDELLAWGRDVQRAVGDALEVVHPDNPAIRGVRHCMWTGKPIADDAHGRAV
VIAGDSLVDRSPCGTGSSARVAQRFARGWLKEGEAYCHESLIGSRFIGRVESTVRLESGVDAVLSSIEGRAWVTGRAQYR
VDPSQPYALGFSLQEFVN

Sequences:

>Translated_338_residues
MTIHGFTCIEGHTEGMPVRMVIDGAPTLQGATMNARREDFVAHHDWVRRTLMLEPRGHAHMSGTIFYPPVSDNADFSLLF
IETSGCLPMCGHATIGSIAFAIEERLVVPKRPGTVTVDVPAGQIVARYQTDGERVTSVRFTNVPSFLLKRDVEIAIPALG
TLAVDIAYGGNFYPIVEVQPNFPGCEHFTPDELLAWGRDVQRAVGDALEVVHPDNPAIRGVRHCMWTGKPIADDAHGRAV
VIAGDSLVDRSPCGTGSSARVAQRFARGWLKEGEAYCHESLIGSRFIGRVESTVRLESGVDAVLSSIEGRAWVTGRAQYR
VDPSQPYALGFSLQEFVN
>Mature_337_residues
TIHGFTCIEGHTEGMPVRMVIDGAPTLQGATMNARREDFVAHHDWVRRTLMLEPRGHAHMSGTIFYPPVSDNADFSLLFI
ETSGCLPMCGHATIGSIAFAIEERLVVPKRPGTVTVDVPAGQIVARYQTDGERVTSVRFTNVPSFLLKRDVEIAIPALGT
LAVDIAYGGNFYPIVEVQPNFPGCEHFTPDELLAWGRDVQRAVGDALEVVHPDNPAIRGVRHCMWTGKPIADDAHGRAVV
IAGDSLVDRSPCGTGSSARVAQRFARGWLKEGEAYCHESLIGSRFIGRVESTVRLESGVDAVLSSIEGRAWVTGRAQYRV
DPSQPYALGFSLQEFVN

Specific function: Unknown

COG id: COG3938

COG function: function code E; Proline racemase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the proline racemase family [H]

Homologues:

Organism=Homo sapiens, GI21389361, Length=337, Percent_Identity=32.6409495548961, Blast_Score=160, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008794 [H]

Pfam domain/function: PF05544 Pro_racemase [H]

EC number: NA

Molecular weight: Translated: 36866; Mature: 36735

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIHGFTCIEGHTEGMPVRMVIDGAPTLQGATMNARREDFVAHHDWVRRTLMLEPRGHAH
CEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCE
MSGTIFYPPVSDNADFSLLFIETSGCLPMCGHATIGSIAFAIEERLVVPKRPGTVTVDVP
ECCEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCEECCCCCCEEEEECC
AGQIVARYQTDGERVTSVRFTNVPSFLLKRDVEIAIPALGTLAVDIAYGGNFYPIVEVQP
CCEEEEEEECCCCEEEEEEECCCCHHHHHCCCEEEECCCCEEEEEEEECCCEEEEEEECC
NFPGCEHFTPDELLAWGRDVQRAVGDALEVVHPDNPAIRGVRHCMWTGKPIADDAHGRAV
CCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCEE
VIAGDSLVDRSPCGTGSSARVAQRFARGWLKEGEAYCHESLIGSRFIGRVESTVRLESGV
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCCH
DAVLSSIEGRAWVTGRAQYRVDPSQPYALGFSLQEFVN
HHHHHHCCCCEEEECCEEEEECCCCCEEECCCHHHHCC
>Mature Secondary Structure 
TIHGFTCIEGHTEGMPVRMVIDGAPTLQGATMNARREDFVAHHDWVRRTLMLEPRGHAH
EEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCE
MSGTIFYPPVSDNADFSLLFIETSGCLPMCGHATIGSIAFAIEERLVVPKRPGTVTVDVP
ECCEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCEECCCCCCEEEEECC
AGQIVARYQTDGERVTSVRFTNVPSFLLKRDVEIAIPALGTLAVDIAYGGNFYPIVEVQP
CCEEEEEEECCCCEEEEEEECCCCHHHHHCCCEEEECCCCEEEEEEEECCCEEEEEEECC
NFPGCEHFTPDELLAWGRDVQRAVGDALEVVHPDNPAIRGVRHCMWTGKPIADDAHGRAV
CCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCEE
VIAGDSLVDRSPCGTGSSARVAQRFARGWLKEGEAYCHESLIGSRFIGRVESTVRLESGV
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCCH
DAVLSSIEGRAWVTGRAQYRVDPSQPYALGFSLQEFVN
HHHHHHCCCCEEEECCEEEEECCCCCEEECCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]