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The map label for this gene is ydcN [H]

Identifier: 189351982

GI number: 189351982

Start: 2955

End: 3566

Strand: Reverse

Name: ydcN [H]

Synonym: BMULJ_03199

Alternate gene names: 189351982

Gene position: 3566-2955 (Counterclockwise)

Preceding gene: 189351987

Following gene: 189351981

Centisome position: 0.14

GC content: 69.77

Gene sequence:

>612_bases
ATGGCAAGTTCATCCGGATCGCGGCGCACGACTGCCGGCGCCGCCCCGCAGCCGCCGGCCGCGACGCCGCCGCGCGTCGG
CGAACAGATCCAGCGGCTGCGCAACGAACGCAAGCTCACGCTCGACGATCTGTCCCGGGCGGCCGGCGTCTCGAAATCGA
TGCTCTCCGAAATCGAGCGCGACAAGGCGAACCCGACGATCGCAGTCGCATGGCGGCTGACGAACGCGCTCGGCATCACG
CTCGACGAGCTGTTCTCGCAGCCGAAAGCGCCCGAGGCGATTCGCGTGGACGGACCGCACGACATCCCGACGCTCGCCGG
CCACGACGGCCAGTACCAGCTGCGCGTGTGGGGGCCGATCGATCTCGCCGGCAAATTCGAGTGGTACGAACTCACGCTAC
CGGGCGGCGGCGCGCTCGTGTCGAACGCGCACGAACCCGGCACGCGCGAACACCTCACCGTGCTGCAAGGGACGATGGAG
ATCGAGGCCGGCGCCGCGAGCCGGCGCCTGAAGGCCGGCGACACCGGCCGCTATGCCGCCGACACGCCCCACGCGATCCG
CAATCCGGGCAAGGCCGAAGCCCGCGCATTGTTGATCGTGATCCATCGCTGA

Upstream 100 bases:

>100_bases
GCCTGCTACTGTTATAGTCGGTCGTTCGGTTGACCGCATTTATCCGATATTTCGAACTCGAATTCGAAATACCGAACAAC
TCTAAGCGAACGGAATCCAA

Downstream 100 bases:

>100_bases
CGGCGCCGATAGTCGGCCGAGCGGCCAGTTGCGGAAAGAACTGTATATTTGTACAGTATACGGACATTCCGCCATGCACT
GGCCGAGCGGCGCCGTACGC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MASSSGSRRTTAGAAPQPPAATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGIT
LDELFSQPKAPEAIRVDGPHDIPTLAGHDGQYQLRVWGPIDLAGKFEWYELTLPGGGALVSNAHEPGTREHLTVLQGTME
IEAGAASRRLKAGDTGRYAADTPHAIRNPGKAEARALLIVIHR

Sequences:

>Translated_203_residues
MASSSGSRRTTAGAAPQPPAATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGIT
LDELFSQPKAPEAIRVDGPHDIPTLAGHDGQYQLRVWGPIDLAGKFEWYELTLPGGGALVSNAHEPGTREHLTVLQGTME
IEAGAASRRLKAGDTGRYAADTPHAIRNPGKAEARALLIVIHR
>Mature_202_residues
ASSSGSRRTTAGAAPQPPAATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITL
DELFSQPKAPEAIRVDGPHDIPTLAGHDGQYQLRVWGPIDLAGKFEWYELTLPGGGALVSNAHEPGTREHLTVLQGTMEI
EAGAASRRLKAGDTGRYAADTPHAIRNPGKAEARALLIVIHR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=165, Percent_Identity=30.3030303030303, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21788; Mature: 21657

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSSGSRRTTAGAAPQPPAATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIER
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHH
DKANPTIAVAWRLTNALGITLDELFSQPKAPEAIRVDGPHDIPTLAGHDGQYQLRVWGPI
HCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCC
DLAGKFEWYELTLPGGGALVSNAHEPGTREHLTVLQGTMEIEAGAASRRLKAGDTGRYAA
CCCCCEEEEEEEECCCCCEECCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCC
DTPHAIRNPGKAEARALLIVIHR
CCCHHHCCCCCCCCEEEEEEEEC
>Mature Secondary Structure 
ASSSGSRRTTAGAAPQPPAATPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIER
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHH
DKANPTIAVAWRLTNALGITLDELFSQPKAPEAIRVDGPHDIPTLAGHDGQYQLRVWGPI
HCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCC
DLAGKFEWYELTLPGGGALVSNAHEPGTREHLTVLQGTMEIEAGAASRRLKAGDTGRYAA
CCCCCEEEEEEEECCCCCEECCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCC
DTPHAIRNPGKAEARALLIVIHR
CCCHHHCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]