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The map label for this gene is hda [C]

Identifier: 189184534

GI number: 189184534

Start: 1653947

End: 1654597

Strand: Direct

Name: hda [C]

Synonym: OTT_1627

Alternate gene names: 189184534

Gene position: 1653947-1654597 (Clockwise)

Preceding gene: 189184533

Following gene: 189184536

Centisome position: 82.33

GC content: 29.8

Gene sequence:

>651_bases
ATGCAACATACTATAAATTTTCCAAATAACTCTAAATACCTAGAAGAAGATTATATTGTTACAAGTTCAAACTTTGATGC
ATATCAGTTAATTAAAAACTGGCCTTCTATGTGGGGAATAACTCCATACTCTAAATCCTTACTTGTTTGTGGGCCACCTT
CTTCTGGCAAAACTTACTTAGCAAACATTTGGCAAAGATATGCTAATGCAGTTTTTATGTCTAGTTCAGATAATATTGAT
CAATTTTATCAAACGAAACCAAGCTTTATTATAGAAGATATAGATAAAACCCATTGGACAGATAAAAAGTTATTACATAT
TTTTAATATATTACACGAAAATAATAAATTTTTAATGCTAACATGCAGTATGCATCCTACTAATTTTATATTACCAGATC
TTGCTTCTAGACTAAGCGCTGTTTTAACTATAAAGCTTCATCGACCAGATGACGAAATGATGAAAATAGTTTTAATGAAA
GCGTTCTCTGAACGTTCTCTGAAAGTATCAACTGAAATTATTAACTACTTATCCTCAAGGCTAACCAGGGAATTTAGTAT
AATTCATGATACGGTAAAATTAATTGATAAATATTCATTAGAGCATAAACGCAATATCACCATTCCATTACTCAAAGAAC
TACTTAAGTAG

Upstream 100 bases:

>100_bases
TAGAGATTCATAGTTTTCTTTTTTGTATTTTTATTTAATACTTAAGCTGACTTTGCAGTAAATAATATATTTATTATCTT
TAAAGTTTTAATATTTAAAT

Downstream 100 bases:

>100_bases
TATTCAAAGGCTTTAAAGATATATTCTAATTTGCTTTCTATTTTATAGAGAAATTAACAAATACTAACAAGCTGTTTCTG
CAGGCGAATTGGTTACTGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MQHTINFPNNSKYLEEDYIVTSSNFDAYQLIKNWPSMWGITPYSKSLLVCGPPSSGKTYLANIWQRYANAVFMSSSDNID
QFYQTKPSFIIEDIDKTHWTDKKLLHIFNILHENNKFLMLTCSMHPTNFILPDLASRLSAVLTIKLHRPDDEMMKIVLMK
AFSERSLKVSTEIINYLSSRLTREFSIIHDTVKLIDKYSLEHKRNITIPLLKELLK

Sequences:

>Translated_216_residues
MQHTINFPNNSKYLEEDYIVTSSNFDAYQLIKNWPSMWGITPYSKSLLVCGPPSSGKTYLANIWQRYANAVFMSSSDNID
QFYQTKPSFIIEDIDKTHWTDKKLLHIFNILHENNKFLMLTCSMHPTNFILPDLASRLSAVLTIKLHRPDDEMMKIVLMK
AFSERSLKVSTEIINYLSSRLTREFSIIHDTVKLIDKYSLEHKRNITIPLLKELLK
>Mature_216_residues
MQHTINFPNNSKYLEEDYIVTSSNFDAYQLIKNWPSMWGITPYSKSLLVCGPPSSGKTYLANIWQRYANAVFMSSSDNID
QFYQTKPSFIIEDIDKTHWTDKKLLHIFNILHENNKFLMLTCSMHPTNFILPDLASRLSAVLTIKLHRPDDEMMKIVLMK
AFSERSLKVSTEIINYLSSRLTREFSIIHDTVKLIDKYSLEHKRNITIPLLKELLK

Specific function: Unknown

COG id: COG0593

COG function: function code L; ATPase involved in DNA replication initiation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dnaA family. HdA subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020591
- InterPro:   IPR017788
- InterPro:   IPR013317 [H]

Pfam domain/function: PF00308 Bac_DnaA [H]

EC number: NA

Molecular weight: Translated: 25238; Mature: 25238

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHTINFPNNSKYLEEDYIVTSSNFDAYQLIKNWPSMWGITPYSKSLLVCGPPSSGKTYL
CCCEECCCCCCCEECCCEEEECCCCHHHHHHHCCHHHCCCCCCCCCEEEECCCCCCCHHH
ANIWQRYANAVFMSSSDNIDQFYQTKPSFIIEDIDKTHWTDKKLLHIFNILHENNKFLML
HHHHHHHHHEEEECCCCCHHHHHHCCCCCEEHHCHHHCCCHHHHHHHHHHHHCCCCEEEE
TCSMHPTNFILPDLASRLSAVLTIKLHRPDDEMMKIVLMKAFSERSLKVSTEIINYLSSR
EECCCCCCCHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LTREFSIIHDTVKLIDKYSLEHKRNITIPLLKELLK
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
>Mature Secondary Structure
MQHTINFPNNSKYLEEDYIVTSSNFDAYQLIKNWPSMWGITPYSKSLLVCGPPSSGKTYL
CCCEECCCCCCCEECCCEEEECCCCHHHHHHHCCHHHCCCCCCCCCEEEECCCCCCCHHH
ANIWQRYANAVFMSSSDNIDQFYQTKPSFIIEDIDKTHWTDKKLLHIFNILHENNKFLML
HHHHHHHHHEEEECCCCCHHHHHHCCCCCEEHHCHHHCCCHHHHHHHHHHHHCCCCEEEE
TCSMHPTNFILPDLASRLSAVLTIKLHRPDDEMMKIVLMKAFSERSLKVSTEIINYLSSR
EECCCCCCCHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LTREFSIIHDTVKLIDKYSLEHKRNITIPLLKELLK
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]