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The map label for this gene is comF [H]

Identifier: 189184533

GI number: 189184533

Start: 1653071

End: 1653817

Strand: Direct

Name: comF [H]

Synonym: OTT_1626

Alternate gene names: 189184533

Gene position: 1653071-1653817 (Clockwise)

Preceding gene: 189184532

Following gene: 189184534

Centisome position: 82.28

GC content: 28.51

Gene sequence:

>747_bases
ATGTGTTCTTTAATTAGTTCTTGGTTACAAATAATCATCTACCCGTTAATAATATTATTAAATTATTTTTTTCCAAGACA
ATGCTTAACATGCCAACAGCTTATTCAAAGTGCTTTGCCAGCTGGATTATGCTCAACTTGTTGGAATAAAATTAACTTTA
TTACTTTGCCATTTTGTCAAAAATGTGGCAGAGCTTTACCTTATGATTATGGAGCTGATGTAATTTGCCTTAAATGTTGT
CATACTGCACCTAATTACGAATTAGCAAGAGCATTATTAATTTTTAATGAAGATAGTAAATTTTTAATTCATGCTTTCAA
ATATTATGACAAACCTTTAATTGCAATGATGCTAGCGCAATTATTATATGTACGTTATCAATATAATATTTTATCTGCAG
ATTACATAATACCAGTACCTATACATCGATTTAAACTTTTGTTACGAGGGTACAACCAAGCACAAGTCTTAGGTAAATAT
TTATCGGATATTGCTAAGCTACCTATAAAATCCAACATATTGATCAAGTATAAATGGACTAAATCACAAACTAAATTAAC
AAAAAAAGAGCGTATAAAAAACATCAGTGGAAGCTTTAGAATTAATAACTCAGAAATTATAAAAAATAAAAAAATAATAT
TACTGGATGATGTTGTTACAACTGGAACAACTGTTAACTTATGCACTAAGCTTCTTAAAAATGCTGGAGCAAAAAGTGTA
TTTGTGCTTTGCATTGCATATACTTAA

Upstream 100 bases:

>100_bases
TATGCCAAAAGACAATTAACTTGGTTTAGAAATCAAACAATTAATGGATATACATTACATTATCAAAGTATGAGCGAGTT
ATACAAAACGCAAGTTAACG

Downstream 100 bases:

>100_bases
GTTAAAAAATTCATTTATCTTTTTACTAGTAGAGATTCATAGTTTTCTTTTTTGTATTTTTATTTAATACTTAAGCTGAC
TTTGCAGTAAATAATATATT

Product: hypothetical protein

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MCSLISSWLQIIIYPLIILLNYFFPRQCLTCQQLIQSALPAGLCSTCWNKINFITLPFCQKCGRALPYDYGADVICLKCC
HTAPNYELARALLIFNEDSKFLIHAFKYYDKPLIAMMLAQLLYVRYQYNILSADYIIPVPIHRFKLLLRGYNQAQVLGKY
LSDIAKLPIKSNILIKYKWTKSQTKLTKKERIKNISGSFRINNSEIIKNKKIILLDDVVTTGTTVNLCTKLLKNAGAKSV
FVLCIAYT

Sequences:

>Translated_248_residues
MCSLISSWLQIIIYPLIILLNYFFPRQCLTCQQLIQSALPAGLCSTCWNKINFITLPFCQKCGRALPYDYGADVICLKCC
HTAPNYELARALLIFNEDSKFLIHAFKYYDKPLIAMMLAQLLYVRYQYNILSADYIIPVPIHRFKLLLRGYNQAQVLGKY
LSDIAKLPIKSNILIKYKWTKSQTKLTKKERIKNISGSFRINNSEIIKNKKIILLDDVVTTGTTVNLCTKLLKNAGAKSV
FVLCIAYT
>Mature_248_residues
MCSLISSWLQIIIYPLIILLNYFFPRQCLTCQQLIQSALPAGLCSTCWNKINFITLPFCQKCGRALPYDYGADVICLKCC
HTAPNYELARALLIFNEDSKFLIHAFKYYDKPLIAMMLAQLLYVRYQYNILSADYIIPVPIHRFKLLLRGYNQAQVLGKY
LSDIAKLPIKSNILIKYKWTKSQTKLTKKERIKNISGSFRINNSEIIKNKKIILLDDVVTTGTTVNLCTKLLKNAGAKSV
FVLCIAYT

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=212, Percent_Identity=27.3584905660377, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 28413; Mature: 28413

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
4.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCSLISSWLQIIIYPLIILLNYFFPRQCLTCQQLIQSALPAGLCSTCWNKINFITLPFCQ
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEHHHH
KCGRALPYDYGADVICLKCCHTAPNYELARALLIFNEDSKFLIHAFKYYDKPLIAMMLAQ
HCCCCCCCCCCCCHHEEEHHCCCCCHHHHHEEEEECCCCHHHHHHHHHHCCHHHHHHHHH
LLYVRYQYNILSADYIIPVPIHRFKLLLRGYNQAQVLGKYLSDIAKLPIKSNILIKYKWT
HHHHHHHHEEECCCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEC
KSQTKLTKKERIKNISGSFRINNSEIIKNKKIILLDDVVTTGTTVNLCTKLLKNAGAKSV
CHHHHHHHHHHHHCCCCCEEECCHHHHCCCCEEEEECCHHCCCHHHHHHHHHHCCCCCEE
FVLCIAYT
EEEEEEEC
>Mature Secondary Structure
MCSLISSWLQIIIYPLIILLNYFFPRQCLTCQQLIQSALPAGLCSTCWNKINFITLPFCQ
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEHHHH
KCGRALPYDYGADVICLKCCHTAPNYELARALLIFNEDSKFLIHAFKYYDKPLIAMMLAQ
HCCCCCCCCCCCCHHEEEHHCCCCCHHHHHEEEEECCCCHHHHHHHHHHCCHHHHHHHHH
LLYVRYQYNILSADYIIPVPIHRFKLLLRGYNQAQVLGKYLSDIAKLPIKSNILIKYKWT
HHHHHHHHEEECCCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEC
KSQTKLTKKERIKNISGSFRINNSEIIKNKKIILLDDVVTTGTTVNLCTKLLKNAGAKSV
CHHHHHHHHHHHHCCCCCEEECCHHHHCCCCEEEEECCHHCCCHHHHHHHHHHCCCCCEE
FVLCIAYT
EEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]