| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189184524
Identifier: 189184524
GI number: 189184524
Start: 1646106
End: 1646525
Strand: Direct
Name: 189184524
Synonym: OTT_1617
Alternate gene names: NA
Gene position: 1646106-1646525 (Clockwise)
Preceding gene: 189184523
Following gene: 189184525
Centisome position: 81.94
GC content: 30.71
Gene sequence:
>420_bases TTGATACACCATGTAAAAGGTTGCTGCATTTCAGATTGCATTGTTTATACGGATTATGACTATGAAAAAATTCGTATGAC TGAATATGGAGATGAAATACAGCAAATACTAACTCAGCTGCTTGATAATGCAAATCGATTTGGAGAAAAAGTTAAAGTAA TACTCATTAGAGTTAGATTACTAAATTCAGAAATACGAGACAAAACACTAGAACTTACAATTCGAAATAATGGAAACAAC ATAAAAAAATTACAAAAAATAAATACTGCTTTCAAAACTCCAAATGAAGATAACGTCTTAGGTTTAGGGCTGACATTTGT TAAGCTACTACTTCAAGCAATAAAGGGAGAAATTACATACGTAAAAAATGAGCATACAGAGGTTATATGCCGTGTACCGA TATATGCTCATTATCTTTAA
Upstream 100 bases:
>100_bases AGTCTAGTGTAGAACCTTTCTCCAGATTGGTGGTAAGGTGGATCAAGATAAACGAAGTCACCTTTTTTAGGTTCTATAAA TGAAAAATCTGTAGCATAAA
Downstream 100 bases:
>100_bases TTTTCTAAAATAAGGGTGATTTATGATATTAGAAAAAGAATTCAATTCAGAAATAGAAATGAAGATTACTAAATCTGCTC TAAATGCAGTTGCAGAATAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 139; Mature: 139
Protein sequence:
>139_residues MIHHVKGCCISDCIVYTDYDYEKIRMTEYGDEIQQILTQLLDNANRFGEKVKVILIRVRLLNSEIRDKTLELTIRNNGNN IKKLQKINTAFKTPNEDNVLGLGLTFVKLLLQAIKGEITYVKNEHTEVICRVPIYAHYL
Sequences:
>Translated_139_residues MIHHVKGCCISDCIVYTDYDYEKIRMTEYGDEIQQILTQLLDNANRFGEKVKVILIRVRLLNSEIRDKTLELTIRNNGNN IKKLQKINTAFKTPNEDNVLGLGLTFVKLLLQAIKGEITYVKNEHTEVICRVPIYAHYL >Mature_139_residues MIHHVKGCCISDCIVYTDYDYEKIRMTEYGDEIQQILTQLLDNANRFGEKVKVILIRVRLLNSEIRDKTLELTIRNNGNN IKKLQKINTAFKTPNEDNVLGLGLTFVKLLLQAIKGEITYVKNEHTEVICRVPIYAHYL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16125; Mature: 16125
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIHHVKGCCISDCIVYTDYDYEKIRMTEYGDEIQQILTQLLDNANRFGEKVKVILIRVRL CCCCCCCCCHHCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH LNSEIRDKTLELTIRNNGNNIKKLQKINTAFKTPNEDNVLGLGLTFVKLLLQAIKGEITY HHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCEEE VKNEHTEVICRVPIYAHYL EECCCCEEEEECCEEEECC >Mature Secondary Structure MIHHVKGCCISDCIVYTDYDYEKIRMTEYGDEIQQILTQLLDNANRFGEKVKVILIRVRL CCCCCCCCCHHCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH LNSEIRDKTLELTIRNNGNNIKKLQKINTAFKTPNEDNVLGLGLTFVKLLLQAIKGEITY HHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCEEE VKNEHTEVICRVPIYAHYL EECCCCEEEEECCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA