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The map label for this gene is ubiD [C]

Identifier: 189184484

GI number: 189184484

Start: 1606893

End: 1608386

Strand: Direct

Name: ubiD [C]

Synonym: OTT_1577

Alternate gene names: 189184484

Gene position: 1606893-1608386 (Clockwise)

Preceding gene: 189184482

Following gene: 189184500

Centisome position: 79.99

GC content: 34.14

Gene sequence:

>1494_bases
ATGGCATATAAAAATTTCCAGCAGTTCTTAGAATTACTACAAACAAAAAATTTATTACACCATATTTCAGAGCCTGTGTT
TGCTAATCTTGAGATTACAGAAATTAGTCGTAGAGTATTTAACAATAATGGACCAGCTCTTTTTTTTAGCAACGTGTTAG
ATGATCATGGAAACAAATATCAGTATCCAGTAGTATCTAATCTGTTTGGGACAGTGGAAAGAATTGCGCTAGGGTTAGGT
GGCGATATTTCCTATTTGAAAGAAATTGGAAATCTACTAGCCTTTTTAAGGCAGCCAAATCCCCCGTCTTCTTTTAAAGA
AATTTTAAAATTATTGCCAATTGCAAGAAAAGTGATAAGTATGCCTCCTAAAATTGTATCAACAGGAGCATGCCAATCAA
TAGTAATGAAAGAAGTGAACCTATATTCCTTGCCAATTCAAAAATGTTGGCCTGATGATGTTGGGCCTCTAATTACTTGG
CCTTTAGTGGTTACTAAAGGCCCTACATCTGATCAAGTTGATCAATTTAATTTAGGGGTATATCGATTGCAATTGATAGA
AAAAGATAAATTATTAATGCGATGGTTAAAACTTAGGGGCGGAGCTCAGCAATATTTAAGATGGTCTCAAACTGCAAAAC
ATCAGTCTTTTCCTGCAGCTGCTGTTATTGGAGCTGATCCAGCAACAATTTTAGCTGCTGTTATGCCATTACCAGAAAAC
GTTTCAGAGTATAATTTCGCTAGCTTATTGAGAGGAAGTAATATTAATCTGGTTAATTGTTTAACTATTGACCTCAAAGT
GCCAGCTGAAGCTGAAATAATCTTAGAGGGAGAGGTTAGCTTTGATGATTATCAGAATGAAGGACCTTTTGGAGATCATA
CTGGCTATTACAATGAAGTAGAAAAATTTCCAGTTTTTACTGTTAAGGCTATTACTATGAGACCTAATCCTGTATATTTA
ACTACTTATACTGGCAAACCTCCAGATGAACCATCTGTTATTGGCGAAGCATTAAATGAAATTGTGATACCGTTAATTCA
AAAACAATTTCCTGAAATTTTGGATTTTTGGCTTCCTCCTGAAGGATGTTCATACCGAATTGCAATTGTCAGCATCAAAA
AAGATTATCCAGGACAAGCTCAGCGAATAATGATGGGAGTTTGGTCTTTTTTAAGGCAATTTATCTATACTAAATATGTT
ATTGTAGTAGATAATGATATTAACATACGCAATTGGAAAGAAGTAATGTGGGCAATATCAACTAGAACAGATCCTCAAAG
AGATACTACAATAATTAATAATACTCCAATTGATTACTTAGATTTTGCTTCGCCAGAATCAGGACTAGGTAGTAAGATGG
GTATTGATGCTACTAACAAAATGTATCCTGAAACTACAAGGAAATGGGGCAAAAAAATAGACATGCCTCAGGATTTAGTT
GATACAGTAACTCAAAAATGGCATCTTTATGGATTTAATAAAAATATTATGTAA

Upstream 100 bases:

>100_bases
ATAAAATGTAATAGAAGTGTCTTTAATTTGTAAATTGTTACATTGTATCTTACTAAAGTAGTTAATAATTAGTAGCGTTT
TCAATTCAATAGTGAATGTT

Downstream 100 bases:

>100_bases
ACGTGCAATGTGAGGATATACATAGCCAAACTACTATAAAACAGTTATAAATTAAGTGGTATTTAATGTAATATATTAAA
AATTATAACGAAATACTATA

Product: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 497; Mature: 496

Protein sequence:

>497_residues
MAYKNFQQFLELLQTKNLLHHISEPVFANLEITEISRRVFNNNGPALFFSNVLDDHGNKYQYPVVSNLFGTVERIALGLG
GDISYLKEIGNLLAFLRQPNPPSSFKEILKLLPIARKVISMPPKIVSTGACQSIVMKEVNLYSLPIQKCWPDDVGPLITW
PLVVTKGPTSDQVDQFNLGVYRLQLIEKDKLLMRWLKLRGGAQQYLRWSQTAKHQSFPAAAVIGADPATILAAVMPLPEN
VSEYNFASLLRGSNINLVNCLTIDLKVPAEAEIILEGEVSFDDYQNEGPFGDHTGYYNEVEKFPVFTVKAITMRPNPVYL
TTYTGKPPDEPSVIGEALNEIVIPLIQKQFPEILDFWLPPEGCSYRIAIVSIKKDYPGQAQRIMMGVWSFLRQFIYTKYV
IVVDNDINIRNWKEVMWAISTRTDPQRDTTIINNTPIDYLDFASPESGLGSKMGIDATNKMYPETTRKWGKKIDMPQDLV
DTVTQKWHLYGFNKNIM

Sequences:

>Translated_497_residues
MAYKNFQQFLELLQTKNLLHHISEPVFANLEITEISRRVFNNNGPALFFSNVLDDHGNKYQYPVVSNLFGTVERIALGLG
GDISYLKEIGNLLAFLRQPNPPSSFKEILKLLPIARKVISMPPKIVSTGACQSIVMKEVNLYSLPIQKCWPDDVGPLITW
PLVVTKGPTSDQVDQFNLGVYRLQLIEKDKLLMRWLKLRGGAQQYLRWSQTAKHQSFPAAAVIGADPATILAAVMPLPEN
VSEYNFASLLRGSNINLVNCLTIDLKVPAEAEIILEGEVSFDDYQNEGPFGDHTGYYNEVEKFPVFTVKAITMRPNPVYL
TTYTGKPPDEPSVIGEALNEIVIPLIQKQFPEILDFWLPPEGCSYRIAIVSIKKDYPGQAQRIMMGVWSFLRQFIYTKYV
IVVDNDINIRNWKEVMWAISTRTDPQRDTTIINNTPIDYLDFASPESGLGSKMGIDATNKMYPETTRKWGKKIDMPQDLV
DTVTQKWHLYGFNKNIM
>Mature_496_residues
AYKNFQQFLELLQTKNLLHHISEPVFANLEITEISRRVFNNNGPALFFSNVLDDHGNKYQYPVVSNLFGTVERIALGLGG
DISYLKEIGNLLAFLRQPNPPSSFKEILKLLPIARKVISMPPKIVSTGACQSIVMKEVNLYSLPIQKCWPDDVGPLITWP
LVVTKGPTSDQVDQFNLGVYRLQLIEKDKLLMRWLKLRGGAQQYLRWSQTAKHQSFPAAAVIGADPATILAAVMPLPENV
SEYNFASLLRGSNINLVNCLTIDLKVPAEAEIILEGEVSFDDYQNEGPFGDHTGYYNEVEKFPVFTVKAITMRPNPVYLT
TYTGKPPDEPSVIGEALNEIVIPLIQKQFPEILDFWLPPEGCSYRIAIVSIKKDYPGQAQRIMMGVWSFLRQFIYTKYVI
VVDNDINIRNWKEVMWAISTRTDPQRDTTIINNTPIDYLDFASPESGLGSKMGIDATNKMYPETTRKWGKKIDMPQDLVD
TVTQKWHLYGFNKNIM

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=490, Percent_Identity=54.0816326530612, Blast_Score=561, Evalue=1e-161,
Organism=Saccharomyces cerevisiae, GI6320748, Length=516, Percent_Identity=26.937984496124, Blast_Score=150, Evalue=4e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 56361; Mature: 56230

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYKNFQQFLELLQTKNLLHHISEPVFANLEITEISRRVFNNNGPALFFSNVLDDHGNKY
CCHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHCCCCCEEEEHHHHHCCCCEE
QYPVVSNLFGTVERIALGLGGDISYLKEIGNLLAFLRQPNPPSSFKEILKLLPIARKVIS
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
MPPKIVSTGACQSIVMKEVNLYSLPIQKCWPDDVGPLITWPLVVTKGPTSDQVDQFNLGV
CCCHHHCCHHHHHHHHHHCCCEECCHHHCCCCCCCCCEEEEEEEECCCCCCCCHHHCCCE
YRLQLIEKDKLLMRWLKLRGGAQQYLRWSQTAKHQSFPAAAVIGADPATILAAVMPLPEN
EEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCC
VSEYNFASLLRGSNINLVNCLTIDLKVPAEAEIILEGEVSFDDYQNEGPFGDHTGYYNEV
CCCCCHHHHHCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHH
EKFPVFTVKAITMRPNPVYLTTYTGKPPDEPSVIGEALNEIVIPLIQKQFPEILDFWLPP
HHCCEEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EGCSYRIAIVSIKKDYPGQAQRIMMGVWSFLRQFIYTKYVIVVDNDINIRNWKEVMWAIS
CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHH
TRTDPQRDTTIINNTPIDYLDFASPESGLGSKMGIDATNKMYPETTRKWGKKIDMPQDLV
CCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHH
DTVTQKWHLYGFNKNIM
HHHHHCEEEEECCCCCC
>Mature Secondary Structure 
AYKNFQQFLELLQTKNLLHHISEPVFANLEITEISRRVFNNNGPALFFSNVLDDHGNKY
CHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHCCCCCEEEEHHHHHCCCCEE
QYPVVSNLFGTVERIALGLGGDISYLKEIGNLLAFLRQPNPPSSFKEILKLLPIARKVIS
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
MPPKIVSTGACQSIVMKEVNLYSLPIQKCWPDDVGPLITWPLVVTKGPTSDQVDQFNLGV
CCCHHHCCHHHHHHHHHHCCCEECCHHHCCCCCCCCCEEEEEEEECCCCCCCCHHHCCCE
YRLQLIEKDKLLMRWLKLRGGAQQYLRWSQTAKHQSFPAAAVIGADPATILAAVMPLPEN
EEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCC
VSEYNFASLLRGSNINLVNCLTIDLKVPAEAEIILEGEVSFDDYQNEGPFGDHTGYYNEV
CCCCCHHHHHCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHH
EKFPVFTVKAITMRPNPVYLTTYTGKPPDEPSVIGEALNEIVIPLIQKQFPEILDFWLPP
HHCCEEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EGCSYRIAIVSIKKDYPGQAQRIMMGVWSFLRQFIYTKYVIVVDNDINIRNWKEVMWAIS
CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHH
TRTDPQRDTTIINNTPIDYLDFASPESGLGSKMGIDATNKMYPETTRKWGKKIDMPQDLV
CCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHH
DTVTQKWHLYGFNKNIM
HHHHHCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]