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The map label for this gene is holC

Identifier: 189184262

GI number: 189184262

Start: 1383364

End: 1383873

Strand: Reverse

Name: holC

Synonym: OTT_1355

Alternate gene names: NA

Gene position: 1383873-1383364 (Counterclockwise)

Preceding gene: 189184267

Following gene: 189184260

Centisome position: 68.88

GC content: 26.27

Gene sequence:

>510_bases
ATGATTAAGAGCATAAATTTTTACTGTACATTAACTGAACTATTTAATCAAACTCTTTGTAAGTTATTGGAAAAATGTTA
TTCGACTTCTTTGAACACAATTACATTAGTAGATGAAAAAAAAACTGAAGAAGCTATAAATAATACTTTATGGTCTTTTA
GTTCTACATCGTTTATTCCTCATGGTTGTAGTATCGATCCTGAACCTAGTAGTCAACCAATATATATCACAACTAATTAT
GAAAATCCCAATCAAGCTAAGATATTAGTACTAGTAATCTTAAGCTACAACTGCTGTAATGCTGACTATGATAACAATAT
AAGTTATTTTCAACAATTTGAAAGAATACTAATAATATTTAAGGAAAATGACAATAAATTGATAGATTACATGAATAATT
ATTATCATAGGCTTAAACAAGATGGATATTTGCCAAGTTACTTTAAGCAAAAACAACAAAATAAGAATAAGCAAGCTCAA
TGGCAACTATTAACTGATGAATTAATTTAA

Upstream 100 bases:

>100_bases
AAACATCAATATTATAAAGTATTTGCATAAAGTATTTTATATTTTTGCATATCATCTATACTTATTAATTGATTTTCTAC
TAACCTAAAAAAATAATTAA

Downstream 100 bases:

>100_bases
GATAAATTCTTGAATTAAATATGATTTACTATTCTTCCATCATTCGGCGCCTCATCGCCCTCTCCTTTCTGTGCCTACGC
TCTGATTCTTGCTTTTTTCT

Product: DNA polymerase III chi subunit HolC

Products: diphosphate; DNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MIKSINFYCTLTELFNQTLCKLLEKCYSTSLNTITLVDEKKTEEAINNTLWSFSSTSFIPHGCSIDPEPSSQPIYITTNY
ENPNQAKILVLVILSYNCCNADYDNNISYFQQFERILIIFKENDNKLIDYMNNYYHRLKQDGYLPSYFKQKQQNKNKQAQ
WQLLTDELI

Sequences:

>Translated_169_residues
MIKSINFYCTLTELFNQTLCKLLEKCYSTSLNTITLVDEKKTEEAINNTLWSFSSTSFIPHGCSIDPEPSSQPIYITTNY
ENPNQAKILVLVILSYNCCNADYDNNISYFQQFERILIIFKENDNKLIDYMNNYYHRLKQDGYLPSYFKQKQQNKNKQAQ
WQLLTDELI
>Mature_169_residues
MIKSINFYCTLTELFNQTLCKLLEKCYSTSLNTITLVDEKKTEEAINNTLWSFSSTSFIPHGCSIDPEPSSQPIYITTNY
ENPNQAKILVLVILSYNCCNADYDNNISYFQQFERILIIFKENDNKLIDYMNNYYHRLKQDGYLPSYFKQKQQNKNKQAQ
WQLLTDELI

Specific function: Unknown

COG id: COG2927

COG function: function code L; DNA polymerase III, chi subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007459 [H]

Pfam domain/function: PF04364 DNA_pol3_chi [H]

EC number: 2.7.7.7

Molecular weight: Translated: 19935; Mature: 19935

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSINFYCTLTELFNQTLCKLLEKCYSTSLNTITLVDEKKTEEAINNTLWSFSSTSFIP
CCCCEEHEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCC
HGCSIDPEPSSQPIYITTNYENPNQAKILVLVILSYNCCNADYDNNISYFQQFERILIIF
CCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHEEEEE
KENDNKLIDYMNNYYHRLKQDGYLPSYFKQKQQNKNKQAQWQLLTDELI
ECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MIKSINFYCTLTELFNQTLCKLLEKCYSTSLNTITLVDEKKTEEAINNTLWSFSSTSFIP
CCCCEEHEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCC
HGCSIDPEPSSQPIYITTNYENPNQAKILVLVILSYNCCNADYDNNISYFQQFERILIIF
CCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHEEEEE
KENDNKLIDYMNNYYHRLKQDGYLPSYFKQKQQNKNKQAQWQLLTDELI
ECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]