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The map label for this gene is lysK [H]

Identifier: 189184247

GI number: 189184247

Start: 1364689

End: 1366269

Strand: Reverse

Name: lysK [H]

Synonym: OTT_1340

Alternate gene names: 189184247

Gene position: 1366269-1364689 (Counterclockwise)

Preceding gene: 189184254

Following gene: 189184244

Centisome position: 68.01

GC content: 30.61

Gene sequence:

>1581_bases
ATGTTAGAATTTTTGAATCATGCAATGCAATCAAAAGCATGGCCATTTATTGAAGCACAAAAAATCCTGAATAAACTAAA
CTATAAGGTTCCATCTAAGGGCTATGTTTTATTTGAAACAGGTTATGGACCTTCTGGATTACCTCATATTGGCACTTTTA
GCGAAGTTGCAAGAACAGTAATGGTAATTGAAGCATTTAAGCAACTATCCAATATACCTACTAAGCTGATATGCTTTTCC
GATGATATGGATGGTTTAAGGAAAGTACCAACTAATCTACCTAATCAAGATATGCTTAAGAAGCATCTTGATAAGCCTTT
AACATCAATTCCAGATCCGTTTAATGAAGCAAAAAGTTATGGTGACTACATGAACGGCAAGCTAATACAATTTTTAAATA
CGTTTAATTTTACATATGAATTTTACAGTGCTACAAAATGCTATAATTCTGGAATGTTTGATAAAATGTTATTAAAAGTT
TTAGCAAACTATGAAAAAATCATGGAAATTATGTTGCCAACATTACGTGAGGAGCGACAAGCAACTTATTGTCCATTTTT
ACCAGTTTGTCCAGAAACAGGTAAAATATTACAAATTCCAGCAATTAAAGTTAATAAAGATGCAGGTACAATAACTTTTC
AGAATCATAATACAGGCAAAATTTTTGAAACAGAAGTTACTAAAGGCAGGTGTAAGCTACAATGGAAACCAGATTTTGCA
ATGAGGTGGGCAGCATTAGAAGTAGATTATGAAATATATGGCAAAGACCATATGATAAATCAACATATATATTCAAAAAT
ATGTCAAGTGCTTGATGGAATTCCTCCTATACAATTTTTCTATGAATTTTTTCTTGATGACACAGGAGATAAAATATCTA
AGTCTAAAGGAAATAGTATCACTGTTGAACAATGGTTAACTTATGCTCCTATGGAAAGCATGTTGTTATTTATTTACCAA
TCACCTACTAAAGCAAAAAGGTTGCATTTTAATGTTATTCCCAAAAATGTTGATGATTACTTAGCATTTATAAAAAAATA
CCATCAAACAGATGATCAAGTAGCTAAGTTAGCTAATCCAGTATATCATATTCACTTAGGGAAGGTTCCAAATATTGATA
CCTATAATTTAAATTTTAGTCTATTACTTAATCTAGCTTCAGTATGCAATCCAGAAAATAAATCCGTATTATGGGGATTT
ATTAACAAATACGCACCAGATGCATCTGCAATAAGCTGTCCATATCTTGATCAGTTAATAGAGTTCGCTATTAGGTATTA
TAATGATTACGTAAAGGTACAAAAAAAATATCTGATACCATCAATACAGCAACGTACAATCTTAGAGCAAATTGATCTCA
CATTAACTGATTTATATGAAGCAGATGCAGAAACGATTCAATCTGCAATCTATAAAATTGGTATAAACAATGGATATGAT
GGTAATCTAAGGTGTTATTTTCAAGAACTGTATCAAATTTTACTTGGGCAATTAGATGGGCCAAGACTAGGTTCTTTCAT
AAAACTATTTGGTATTGATAATACTAAAGCTCTTATTAAAGAGAAATTAATAAATAACTAA

Upstream 100 bases:

>100_bases
AATTTACAGTTATTATAATAAGGTTTACAGTATTTTTTAAGTAAAAACTACTATATAATGTTTTTTTAGCTCTAATAATT
AATTATTGAAATAAGACTAA

Downstream 100 bases:

>100_bases
ATAGTATAGCATACAATAAGACTTAAGGAATGAAGTACAGTACTTACAATCAAGAACTGTGCAAAAATTTCATGAAAAGA
ATTATATAATTTTTATAAAA

Product: lysyl-tRNA synthetase

Products: NA

Alternate protein names: Lysine--tRNA ligase; LysRS [H]

Number of amino acids: Translated: 526; Mature: 526

Protein sequence:

>526_residues
MLEFLNHAMQSKAWPFIEAQKILNKLNYKVPSKGYVLFETGYGPSGLPHIGTFSEVARTVMVIEAFKQLSNIPTKLICFS
DDMDGLRKVPTNLPNQDMLKKHLDKPLTSIPDPFNEAKSYGDYMNGKLIQFLNTFNFTYEFYSATKCYNSGMFDKMLLKV
LANYEKIMEIMLPTLREERQATYCPFLPVCPETGKILQIPAIKVNKDAGTITFQNHNTGKIFETEVTKGRCKLQWKPDFA
MRWAALEVDYEIYGKDHMINQHIYSKICQVLDGIPPIQFFYEFFLDDTGDKISKSKGNSITVEQWLTYAPMESMLLFIYQ
SPTKAKRLHFNVIPKNVDDYLAFIKKYHQTDDQVAKLANPVYHIHLGKVPNIDTYNLNFSLLLNLASVCNPENKSVLWGF
INKYAPDASAISCPYLDQLIEFAIRYYNDYVKVQKKYLIPSIQQRTILEQIDLTLTDLYEADAETIQSAIYKIGINNGYD
GNLRCYFQELYQILLGQLDGPRLGSFIKLFGIDNTKALIKEKLINN

Sequences:

>Translated_526_residues
MLEFLNHAMQSKAWPFIEAQKILNKLNYKVPSKGYVLFETGYGPSGLPHIGTFSEVARTVMVIEAFKQLSNIPTKLICFS
DDMDGLRKVPTNLPNQDMLKKHLDKPLTSIPDPFNEAKSYGDYMNGKLIQFLNTFNFTYEFYSATKCYNSGMFDKMLLKV
LANYEKIMEIMLPTLREERQATYCPFLPVCPETGKILQIPAIKVNKDAGTITFQNHNTGKIFETEVTKGRCKLQWKPDFA
MRWAALEVDYEIYGKDHMINQHIYSKICQVLDGIPPIQFFYEFFLDDTGDKISKSKGNSITVEQWLTYAPMESMLLFIYQ
SPTKAKRLHFNVIPKNVDDYLAFIKKYHQTDDQVAKLANPVYHIHLGKVPNIDTYNLNFSLLLNLASVCNPENKSVLWGF
INKYAPDASAISCPYLDQLIEFAIRYYNDYVKVQKKYLIPSIQQRTILEQIDLTLTDLYEADAETIQSAIYKIGINNGYD
GNLRCYFQELYQILLGQLDGPRLGSFIKLFGIDNTKALIKEKLINN
>Mature_526_residues
MLEFLNHAMQSKAWPFIEAQKILNKLNYKVPSKGYVLFETGYGPSGLPHIGTFSEVARTVMVIEAFKQLSNIPTKLICFS
DDMDGLRKVPTNLPNQDMLKKHLDKPLTSIPDPFNEAKSYGDYMNGKLIQFLNTFNFTYEFYSATKCYNSGMFDKMLLKV
LANYEKIMEIMLPTLREERQATYCPFLPVCPETGKILQIPAIKVNKDAGTITFQNHNTGKIFETEVTKGRCKLQWKPDFA
MRWAALEVDYEIYGKDHMINQHIYSKICQVLDGIPPIQFFYEFFLDDTGDKISKSKGNSITVEQWLTYAPMESMLLFIYQ
SPTKAKRLHFNVIPKNVDDYLAFIKKYHQTDDQVAKLANPVYHIHLGKVPNIDTYNLNFSLLLNLASVCNPENKSVLWGF
INKYAPDASAISCPYLDQLIEFAIRYYNDYVKVQKKYLIPSIQQRTILEQIDLTLTDLYEADAETIQSAIYKIGINNGYD
GNLRCYFQELYQILLGQLDGPRLGSFIKLFGIDNTKALIKEKLINN

Specific function: Unknown

COG id: COG1384

COG function: function code J; Lysyl-tRNA synthetase (class I)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008925
- InterPro:   IPR020751
- InterPro:   IPR001412
- InterPro:   IPR002904
- InterPro:   IPR020754
- InterPro:   IPR020756
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01921 tRNA-synt_1f [H]

EC number: =6.1.1.6 [H]

Molecular weight: Translated: 60530; Mature: 60530

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEFLNHAMQSKAWPFIEAQKILNKLNYKVPSKGYVLFETGYGPSGLPHIGTFSEVARTV
CHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
MVIEAFKQLSNIPTKLICFSDDMDGLRKVPTNLPNQDMLKKHLDKPLTSIPDPFNEAKSY
HHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCHHHHHHHHCCCHHHCCCCHHHHHHH
GDYMNGKLIQFLNTFNFTYEFYSATKCYNSGMFDKMLLKVLANYEKIMEIMLPTLREERQ
HHHCCCHHHHHHHHHCCEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ATYCPFLPVCPETGKILQIPAIKVNKDAGTITFQNHNTGKIFETEVTKGRCKLQWKPDFA
CCCCCCCCCCCCCCCEEEECEEEEECCCCEEEEECCCCCCEEEEECCCCEEEEEECCCHH
MRWAALEVDYEIYGKDHMINQHIYSKICQVLDGIPPIQFFYEFFLDDTGDKISKSKGNSI
EEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCCEE
TVEQWLTYAPMESMLLFIYQSPTKAKRLHFNVIPKNVDDYLAFIKKYHQTDDQVAKLANP
EHHHHHHHCCHHHHEEEEECCCCCHHEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCC
VYHIHLGKVPNIDTYNLNFSLLLNLASVCNPENKSVLWGFINKYAPDASAISCPYLDQLI
EEEEEECCCCCCEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH
EFAIRYYNDYVKVQKKYLIPSIQQRTILEQIDLTLTDLYEADAETIQSAIYKIGINNGYD
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
GNLRCYFQELYQILLGQLDGPRLGSFIKLFGIDNTKALIKEKLINN
CCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCC
>Mature Secondary Structure
MLEFLNHAMQSKAWPFIEAQKILNKLNYKVPSKGYVLFETGYGPSGLPHIGTFSEVARTV
CHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
MVIEAFKQLSNIPTKLICFSDDMDGLRKVPTNLPNQDMLKKHLDKPLTSIPDPFNEAKSY
HHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCHHHHHHHHCCCHHHCCCCHHHHHHH
GDYMNGKLIQFLNTFNFTYEFYSATKCYNSGMFDKMLLKVLANYEKIMEIMLPTLREERQ
HHHCCCHHHHHHHHHCCEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ATYCPFLPVCPETGKILQIPAIKVNKDAGTITFQNHNTGKIFETEVTKGRCKLQWKPDFA
CCCCCCCCCCCCCCCEEEECEEEEECCCCEEEEECCCCCCEEEEECCCCEEEEEECCCHH
MRWAALEVDYEIYGKDHMINQHIYSKICQVLDGIPPIQFFYEFFLDDTGDKISKSKGNSI
EEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCCEE
TVEQWLTYAPMESMLLFIYQSPTKAKRLHFNVIPKNVDDYLAFIKKYHQTDDQVAKLANP
EHHHHHHHCCHHHHEEEEECCCCCHHEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCC
VYHIHLGKVPNIDTYNLNFSLLLNLASVCNPENKSVLWGFINKYAPDASAISCPYLDQLI
EEEEEECCCCCCEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH
EFAIRYYNDYVKVQKKYLIPSIQQRTILEQIDLTLTDLYEADAETIQSAIYKIGINNGYD
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
GNLRCYFQELYQILLGQLDGPRLGSFIKLFGIDNTKALIKEKLINN
CCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA