| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189184185
Identifier: 189184185
GI number: 189184185
Start: 1301221
End: 1302066
Strand: Reverse
Name: 189184185
Synonym: OTT_1278
Alternate gene names: NA
Gene position: 1302066-1301221 (Counterclockwise)
Preceding gene: 189184186
Following gene: 189184180
Centisome position: 64.81
GC content: 32.15
Gene sequence:
>846_bases TTGTATAATAAATCGTCATCTCTATACTATTTAAAACAAGAAGAGGAAGCTAAGGTGGAAGCGATAGTAGTAAACAAATT TTTAGAAAACCATACAGGAATTTATAGTGCAAAAATCTTTAACAATTCTAATTTAAGGGCAAATATGGTTTTTGATGAAG AGACTCAAAAATCCTGGCCTGCACTCACTATTTTTGTTAAAAATGACAAAGATGAAATTACTGGAGCTAAGATATTAGCT CTGAATTCAAAAACATGTAATAAAGCTGATGTAGCTGAAAAATCTGTTGGTACAATTAGTGGATCATTTGCTGAAATTGC TCAACAAAATTCAAAATACTCACCTGTAACAATCATTACAAAGGATATTGAAACAGCGTTAACCATTCAGCAAGCTAGAG TCGAAGGCAAAATCTTATGTGCAATTGAAGCAGAAAATTTGCAAAACTATAATCCTGGCCCAAAAGAAAAGATCATTCTA GCAGTTAAAAATGACGTAAATACTGAAAAAGCTGAAAAAGTTCTAGAGGATAAGGAAGCAGTAGTCTGTACAGTCAAAAA TGACTTCAATAATGTATTAAAAACTCAAGGATTATATGCTGTTAGAAATATTATCAGCCCTGAAAATCGAATTTGTGGTA GCAGTTCATTAAGCATATTAGTTTTACCAGTACCTGTTGTTCCAGTAATAAGAATATGTAGCCTTTCACTATTCTTTACT AATAGCAAGTCTCCAAAACAGATTTTCGAGGCCTTTTTAGCGCTTTTTAGCATTTTGGCTAGATTTCTACTCCGTACAAA ATCAGCACCTCTAATTTTGGCTTTAATAATCGTTTTTTTACCTTGA
Upstream 100 bases:
>100_bases TGAAATTACTAAACTGACTAAGGCAGTTGAAACAACCAAACTTACTCAAACAGAAAATAATAGTATAGCAAAACAAAATG ATATTACAAATGTTAAAGAA
Downstream 100 bases:
>100_bases GCTGTAAAGAAAACAATTGAGATTATCACACCAATAGCAAAAACAATTAATCCTTCTAATAATGCTGAATTGATTAGGAA TTCCCATAATTGCTGTATTT
Product: putative conjugative transfer protein TraI
Products: NA
Alternate protein names: Conjugal Transfer Protein TraA; MobA/MobL Family Protein
Number of amino acids: Translated: 281; Mature: 281
Protein sequence:
>281_residues MYNKSSSLYYLKQEEEAKVEAIVVNKFLENHTGIYSAKIFNNSNLRANMVFDEETQKSWPALTIFVKNDKDEITGAKILA LNSKTCNKADVAEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIQQARVEGKILCAIEAENLQNYNPGPKEKIIL AVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIISPENRICGSSSLSILVLPVPVVPVIRICSLSLFFT NSKSPKQIFEAFLALFSILARFLLRTKSAPLILALIIVFLP
Sequences:
>Translated_281_residues MYNKSSSLYYLKQEEEAKVEAIVVNKFLENHTGIYSAKIFNNSNLRANMVFDEETQKSWPALTIFVKNDKDEITGAKILA LNSKTCNKADVAEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIQQARVEGKILCAIEAENLQNYNPGPKEKIIL AVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIISPENRICGSSSLSILVLPVPVVPVIRICSLSLFFT NSKSPKQIFEAFLALFSILARFLLRTKSAPLILALIIVFLP >Mature_281_residues MYNKSSSLYYLKQEEEAKVEAIVVNKFLENHTGIYSAKIFNNSNLRANMVFDEETQKSWPALTIFVKNDKDEITGAKILA LNSKTCNKADVAEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIQQARVEGKILCAIEAENLQNYNPGPKEKIIL AVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIISPENRICGSSSLSILVLPVPVVPVIRICSLSLFFT NSKSPKQIFEAFLALFSILARFLLRTKSAPLILALIIVFLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31150; Mature: 31150
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYNKSSSLYYLKQEEEAKVEAIVVNKFLENHTGIYSAKIFNNSNLRANMVFDEETQKSWP CCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCCCC ALTIFVKNDKDEITGAKILALNSKTCNKADVAEKSVGTISGSFAEIAQQNSKYSPVTIIT EEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEE KDIETALTIQQARVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKEA CCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCE VVCTVKNDFNNVLKTQGLYAVRNIISPENRICGSSSLSILVLPVPVVPVIRICSLSLFFT EEEEEECHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHEEEEEE NSKSPKQIFEAFLALFSILARFLLRTKSAPLILALIIVFLP CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC >Mature Secondary Structure MYNKSSSLYYLKQEEEAKVEAIVVNKFLENHTGIYSAKIFNNSNLRANMVFDEETQKSWP CCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCCCC ALTIFVKNDKDEITGAKILALNSKTCNKADVAEKSVGTISGSFAEIAQQNSKYSPVTIIT EEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEE KDIETALTIQQARVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKEA CCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCE VVCTVKNDFNNVLKTQGLYAVRNIISPENRICGSSSLSILVLPVPVVPVIRICSLSLFFT EEEEEECHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHEEEEEE NSKSPKQIFEAFLALFSILARFLLRTKSAPLILALIIVFLP CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA