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The map label for this gene is cspA [C]

Identifier: 189184097

GI number: 189184097

Start: 1216320

End: 1216541

Strand: Reverse

Name: cspA [C]

Synonym: OTT_1190

Alternate gene names: 189184097

Gene position: 1216541-1216320 (Counterclockwise)

Preceding gene: 189184102

Following gene: 189184096

Centisome position: 60.55

GC content: 38.74

Gene sequence:

>222_bases
ATGGCAACAGGTATAGTAAAGTGGTATAATTCTGTCAAGGGGTATGGATTCATTCAGCCTTCAGAAAAGGTTAAAGATGG
CGGAAAAATGGAAGATGTTTTTGTGCATGCTACTGCAGTAGTAGCAGCTGGAGTAGCTGATCTCAAGGAAGGGCAAAGAG
TAAGTTTTCAGATAGGATCTCAAAAAGGTAGAATTTATGCTACAAATTTAGTGCTAGACTAA

Upstream 100 bases:

>100_bases
TCATAGAATGTATAGTAATTTAGTATTTTAAGTCTCTAGTTACATTAATCACTAAATATCTCTAGTAGCTCGCAAATACT
AAATTAATTAAAGGTTTTTT

Downstream 100 bases:

>100_bases
AAGTTATCATCTTTTTAGATATTTATTTATGTAGTTTATAAACGTTGTTTCTACATGTTATAAAGTTGTATGTGTTATAA
CTAATAATCAAGATAGATAA

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 72

Protein sequence:

>73_residues
MATGIVKWYNSVKGYGFIQPSEKVKDGGKMEDVFVHATAVVAAGVADLKEGQRVSFQIGSQKGRIYATNLVLD

Sequences:

>Translated_73_residues
MATGIVKWYNSVKGYGFIQPSEKVKDGGKMEDVFVHATAVVAAGVADLKEGQRVSFQIGSQKGRIYATNLVLD
>Mature_72_residues
ATGIVKWYNSVKGYGFIQPSEKVKDGGKMEDVFVHATAVVAAGVADLKEGQRVSFQIGSQKGRIYATNLVLD

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7876; Mature: 7745

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGIVKWYNSVKGYGFIQPSEKVKDGGKMEDVFVHATAVVAAGVADLKEGQRVSFQIGS
CCCCHHHHHHCCCCCEEECCCHHHCCCCCCCHHHHHHHHHHHHCHHHCCCCCEEEEEECC
QKGRIYATNLVLD
CCCEEEEEEEEEC
>Mature Secondary Structure 
ATGIVKWYNSVKGYGFIQPSEKVKDGGKMEDVFVHATAVVAAGVADLKEGQRVSFQIGS
CCCHHHHHHCCCCCEEECCCHHHCCCCCCCHHHHHHHHHHHHCHHHCCCCCEEEEEECC
QKGRIYATNLVLD
CCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]